Mir-194-P1

MirGeneDB ID

Aca-Mir-194-P1

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-194-1

Paralogues

Aca-Mir-194-P2

Orthologues

Ami-Mir-194-P1 Bta-Mir-194-P1 Cfa-Mir-194-P1 Cli-Mir-194-P1 Cmi-Mir-194-P1 Cpi-Mir-194-P1 Ebu-Mir-194-o1 Ete-Mir-194-P1 Gga-Mir-194-P1 Gja-Mir-194-P1 Hsa-Mir-194-P1 Lch-Mir-194-P1 Mml-Mir-194-P1 Mmu-Mir-194-P1 Mun-Mir-194-P1 Oan-Mir-194-P1 Ocu-Mir-194-P1 Pbv-Mir-194-P1 Pma-Mir-194-o1 Rno-Mir-194-P1 Spt-Mir-194-P1 Sto-Mir-194-P1 Tgu-Mir-194-P1 Xla-Mir-194-P1a Xla-Mir-194-P1b Xtr-Mir-194-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

1: 243290942-243290997 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-194-P1)

Mir-192-P1 1: 243290668-243290728 [-] UCSC Ensembl
Mir-194-P1 1: 243290942-243290997 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGGUGUUUCAACCAUACAGUGUCGUCAAGUGUAACAGCAACUCCAUGUGGAAUAAGUAGAUUUCCAGUGGAGGUGCUGUUACUUUUGAAGCUACUGACCAAACGUUGAAGUGAAU

Get precursor sequence

Structure

        10          20        30        40        50        
GGGGUGUUUCAACCAUA--|    UCG     U         A      G     UAAG 
                   CAGUG   UCAAG GUAACAGCA CUCCAU UGGAA    \
                   GUCAU   AGUUU CAUUGUCGU GAGGUG ACCUU    U
UAAGUGAAGUUGCAAACCA^    CGA     U         G      -     UAGA 
    110       100        90        80        70         60