MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-215
Paralogues
Orthologues Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
1: 243290668-243290728 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P1)
Mir-192-P1 1: 243290668-243290728 [-] UCSC Ensembl
Mir-194-P1 1: 243290942-243290997 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUCCUGCUCAAAAUGGAGGCUUAGGGUAAUGACCUAUGAUUUGACAGACUGUGCUUUCUAUGUCUGCCUGUCAUUUCUGUAGGCCAAUACUCUGUACGCCCUCACUACUCUACAAAGAA
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Structure
        10        20          30         40        50         
UGUUCCUGCUCAAAAUGGA   U--       A  A     -| UU      ACUGUGCUU 
                   GGC   UAGGGUA UG CCUAU GA  UGACAG         U
                   CCG   GUCUCAU AC GGAUG CU  ACUGUC         C
AAGAAACAUCUCAUCACUC   CAU       A  C     U^ UU      CGUCUGUAU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-192-P1_5p

mirBase accessionMIMAT0021873
Sequence
0- AUGACCUAUGAUUUGACAGACU -22
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Star sequence

Aca-Mir-192-P1_3p*

mirBase accessionMIMAT0021874
Sequence
38- CCUGUCAUUUCUGUAGGCCAAUA -61
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