MirGeneDB ID | Aae-Mir-92-o54 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-92a
|
Paralogues |
Aae-Mir-92-o55
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
A. aegypti
|
Node of Origin (family) |
Bilateria
|
Genome context (Aaeg_L3) |
supercont1.116: 1267213-1267274 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCAGUUCUGCCCCCUAUCAAUCUACGCAUCGGUACGGACAGGGGCAACAUUGUGACAUUUGAAAGCUAAUAUUGCACUUGUCCCGGCCUAUGCGUGGAGUUGGCAUUCAGCGUUUACCGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCAGUUCUGCCCCCUA- -| C AC G C GUGACAU
UCAA UCUACGCAU GGU GGACAGG GCAA AUU U
GGUU AGGUGCGUA CCG CCUGUUC CGUU UAA U
CGGCCAUUUGCGACUUAC G^ U GC A A UCGAAAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Aae-Mir-92-o54_5p* |
mirBase accession | MIMAT0015369 |
Sequence |
0- CGGUACGGACAGGGGCAACAUU -22
Get sequence
|
Mature sequence |
Aae-Mir-92-o54_3p |
mirBase accession | MIMAT0014228 |
Sequence |
40- UAUUGCACUUGUCCCGGCCUAU -62
Get sequence
|