MirGeneDB ID | Aae-Mir-279-o26 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-2945
|
Paralogues |
Aae-Mir-279-P1
Aae-Mir-279-P2a
Aae-Mir-279-P2b1
Aae-Mir-279-P2b2
Aae-Mir-279-P3
|
Orthologues |
Asu-Mir-279-o26
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
A. aegypti
|
Node of Origin (family) |
Protostomia
|
Genome context (Aaeg_L3) |
supercont1.43: 958696-958759 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUUCGUUUUAUUAUGAUUUUCUGAUCUGAGCGGGUCCGUUUCUAGUGUCAUGUGCUGUAUUCGAAUAUCAUGACUAGAGGCAGACUCGUUUAGGUCUGGGAUCGUUGUCUUCAGUUUGCUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUUUCGUUUUAUUAUGAU--|UU U C GU UGCUGUA
U C GAUCUGAGCGGGUC GUUUCUA GUCAUG U
A G CUGGAUUUGCUCAG CGGAGAU CAGUAC U
AUUCGUUUGACUUCUGUUGCU^GG U A -- UAUAAGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aae-Mir-279-o26_5p* |
mirBase accession | MIMAT0014315 |
Sequence |
0- AGCGGGUCCGUUUCUAGUGUCAUG -24
Get sequence
|
Mature sequence |
Aae-Mir-279-o26_3p |
mirBase accession | MIMAT0014316 |
Sequence |
42- UGACUAGAGGCAGACUCGUUUA -64
Get sequence
|