10        20          30        40        50         
CGCACAAGCCGCGCACGGAACU--| A     UC               G    AGUGCA 
                        GG UUUUA  UUUGGUUAUCUAGCU UAUG      U
                        CC AAAAU  AAGCCAAUAGAUCGA AUAC      U
GCAGCCCACCGCUGUCGCCCUCGC^ A     GA               A    UGCUGA 
.       110       100        90        80        70        60