10        20            30        40        50        60
CACAAUUGGAAAUUGGAAUC----|  AA    C        G    U   U     UGGUAC 
                        GGC  UGGC ACGUGUAU CUCG AGC AUAAC      A
                        CCG  AUUG UGCACAUA GAGU UCG UAUUG      A
CGGUAACGGUACAACCCGCUUAGA^  --    A        A    -   U     UAAACU 
 .       110       100          90        80         70