MirGeneDB 2.1

91 microRNA genes with seed UCACAGU
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Ami-Mir-27-P3 ami-mir-27a MIR-27 UCACAGU MIMAT0038067 MIMAT0038068 NW_017713323.1 200584 200646 + Gnathostomata Vertebrata No 1
Oan-Mir-27-P3 oan-mir-27a MIR-27 UCACAGU MIMAT0007062 MIMAT0007063 Oan-Mir-24_27-P1_KAAE-cwe25b12 162 221 + Gnathostomata Vertebrata No 1 1
Mal-Mir-27-P3 None MIR-27 UCACAGU None None KV884862.1 448987 449048 + Gnathostomata Vertebrata No 1 1
Ebu-Mir-27-P6 None MIR-27 UCACAGU None None FYBX02009928.1 2217985 2218048 - E. burgeri Vertebrata No 1 1
Xla-Mir-27-P3c None MIR-27 UCACAGU None None NC_030728.1 133946820 133946881 + X. laevis Vertebrata No 1 1
Pma-Mir-27-o1 pma-mir-27a MIR-27 UCACAGU None MIMAT0019413 NC_046103.1 7153880 7153942 - P. marinus Vertebrata No 1 1
Lch-Mir-27-P1 None MIR-27 UCACAGU None None JH126762.1 1808447 1808510 - Gnathostomata Vertebrata Unknown 1
Tni-Mir-27-P1 None MIR-27 UCACAGU None None 15_random 3094204 3094266 - Gnathostomata Vertebrata No 1
Gmo-Mir-27-P1 gmo-mir-27d MIR-27 UCACAGU MIMAT0046043 MIMAT0046044 contig135158 456 519 - Gnathostomata Vertebrata No 1
Mal-Mir-27-P1 None MIR-27 UCACAGU None None KV884702.1 3701989 3702051 + Gnathostomata Vertebrata No 1
Dre-Mir-27-P1 dre-mir-27a MIR-27 UCACAGU MIMAT0031949 MIMAT0001796 chr2 33902361 33902423 + Gnathostomata Vertebrata No
Loc-Mir-27-P1 None MIR-27 UCACAGU None None LG10 2475632 2475694 - Gnathostomata Vertebrata No
Dsi-Mir-2582-P1 dsi-mir-2582a MIR-2582 UCACAGU MIMAT0012519 MIMAT0012520 X 3954183 3954240 - D. simulans D. simulans Unknown 1
Pma-Mir-27-o2 pma-mir-27b MIR-27 UCACAGU MIMAT0019414 MIMAT0019415 NC_046069.1 793379 793439 - P. marinus Vertebrata No
Tgu-Mir-27-P2 tgu-mir-27 MIR-27 UCACAGU MIMAT0026991 MIMAT0014534 Z 10609064 10609126 - Gnathostomata Vertebrata No 1
Sto-Mir-27-P2 None MIR-27 UCACAGU None None BFAA01002700.1 246153 246216 - Gnathostomata Vertebrata No 1
Hsa-Mir-27-P2 hsa-mir-27b MIR-27 UCACAGU MIMAT0004588 MIMAT0000419 chr9 95085463 95085525 + Gnathostomata Vertebrata No 1
Ami-Mir-27-P2 ami-mir-27b MIR-27 UCACAGU MIMAT0038069 MIMAT0038070 NW_017713772.1 16892748 16892810 - Gnathostomata Vertebrata No
Cmi-Mir-27-P2 None MIR-27 UCACAGU None None KI635929.1 195561 195624 + Gnathostomata Vertebrata No 1
Mml-Mir-27-P2 mml-mir-27b MIR-27 UCACAGU MIMAT0026802 MIMAT0006167 chr15 108904322 108904384 + Gnathostomata Vertebrata No 1
Cpi-Mir-27-P2 cpi-mir-27b MIR-27 UCACAGU MIMAT0037666 MIMAT0037667 JH584764 1108949 1109011 - Gnathostomata Vertebrata No 1
Mmu-Mir-27-P2 mmu-mir-27b MIR-27 UCACAGU MIMAT0004522 MIMAT0000126 chr13 63300718 63300780 + Gnathostomata Vertebrata No 1
Aca-Mir-27-P2 aca-mir-27b MIR-27 UCACAGU MIMAT0021907 MIMAT0021908 2 40591779 40591841 - Gnathostomata Vertebrata No 1
Rno-Mir-27-P2 rno-mir-27b MIR-27 UCACAGU MIMAT0017101 MIMAT0000798 chr17 823479 823541 + Gnathostomata Vertebrata No 1
Pbv-Mir-27-P2 pbv-mir-27b MIR-27 UCACAGU MIMAT0038863 MIMAT0038864 KE954626.1 204891 204953 + Gnathostomata Vertebrata No 1
Cpo-Mir-27-P2 cpo-mir-27b MIR-27 UCACAGU MIMAT0046892 MIMAT0046893 scaffold_42 4055574 4055636 - Gnathostomata Vertebrata No 1
Gja-Mir-27-P2 None MIR-27 UCACAGU None None NW_015167066.1 327064 327126 + Gnathostomata Vertebrata Yes 1
Ocu-Mir-27-P2 ocu-mir-27b MIR-27 UCACAGU MIMAT0048139 MIMAT0048140 chr1 74102379 74102441 + Gnathostomata Vertebrata No 1
Spt-Mir-27-P2 None MIR-27 UCACAGU None None QEPC01008874.1 6803025 6803087 + Gnathostomata Vertebrata Unknown 1
Cfa-Mir-27-P2 cfa-mir-27b MIR-27 UCACAGU None MIMAT0006613 chr1 71678117 71678179 - Gnathostomata Vertebrata No 1
Bta-Mir-27-P2 bta-mir-27b MIR-27 UCACAGU None MIMAT0003546 NC_037335.1 81617258 81617320 + Gnathostomata Vertebrata No 1
Xtr-Mir-27-P2 xtr-mir-27b MIR-27 UCACAGU None MIMAT0003571 chr1 123463716 123463778 + Gnathostomata Vertebrata No 1
Dno-Mir-27-P2 dno-mir-27b MIR-27 UCACAGU MIMAT0047545 MIMAT0047546 JH570415 2090250 2090312 + Gnathostomata Vertebrata No 1
Mun-Mir-27-P2 None MIR-27 UCACAGU None None 27-P2_LR594633.1:206442922-206443060 39 101 - Gnathostomata Vertebrata No 1
Ete-Mir-27-P2 None MIR-27 UCACAGU None None JH980384 3445414 3445476 - Gnathostomata Vertebrata No 1
Lch-Mir-27-P2 None MIR-27 UCACAGU None None JH126823.1 176794 176856 - Gnathostomata Vertebrata Unknown
Sha-Mir-27-P2 sha-mir-27b MIR-27 UCACAGU None MIMAT0022789 GL841474.1 1160088 1160150 + Gnathostomata Vertebrata No
Mdo-Mir-27-P2 mdo-mir-27b MIR-27 UCACAGU MIMAT0026714 MIMAT0004177 6 17696108 17696170 + Gnathostomata Vertebrata No
Oan-Mir-27-P2 oan-mir-27b MIR-27 UCACAGU MIMAT0006956 MIMAT0006957 NC_041753.1 69581278 69581340 + Gnathostomata Vertebrata No
Gga-Mir-27-P2 gga-mir-27b MIR-27 UCACAGU MIMAT0026547 MIMAT0001187 Z 41660880 41660942 + Gnathostomata Vertebrata No 1
Cli-Mir-27-P2 cli-mir-27b MIR-27 UCACAGU MIMAT0038445 MIMAT0038446 scaffold226 157004 157066 + Gnathostomata Vertebrata No 1
Loc-Mir-27-P2 None MIR-27 UCACAGU None None LG2 32741690 32741752 - Gnathostomata Vertebrata No 1
Xla-Mir-27-P2d None MIR-27 UCACAGU None None NC_030725.1 110864416 110864478 + X. laevis Vertebrata No 1
Tgu-Mir-27-P3 None MIR-27 UCACAGU None None 30 3316751 3316812 + Gnathostomata Vertebrata Yes 1
Hsa-Mir-27-P3 hsa-mir-27a MIR-27 UCACAGU MIMAT0004501 MIMAT0000084 chr19 13836447 13836508 - Gnathostomata Vertebrata No 1
Cmi-Mir-27-P3 None MIR-27 UCACAGU None None KI635928.1 354256 354321 + Gnathostomata Vertebrata No
Mml-Mir-27-P3 mml-mir-27a MIR-27 UCACAGU MIMAT0026600 MIMAT0002753 chr19 13839020 13839081 - Gnathostomata Vertebrata No 1
Cpi-Mir-27-P3 cpi-mir-27a MIR-27 UCACAGU MIMAT0037664 MIMAT0037665 JH584948 868327 868390 - Gnathostomata Vertebrata No
Mmu-Mir-27-P3 mmu-mir-27a MIR-27 UCACAGU MIMAT0004633 MIMAT0000537 chr8 84208685 84208747 + Gnathostomata Vertebrata No 1
Aca-Mir-27-P3 aca-mir-27a MIR-27 UCACAGU MIMAT0021905 MIMAT0021906 2 29157937 29157998 - Gnathostomata Vertebrata No 1
Rno-Mir-27-P3 rno-mir-27a MIR-27 UCACAGU MIMAT0004715 MIMAT0000799 chr19 25318749 25318811 + Gnathostomata Vertebrata No 1
Pbv-Mir-27-P3 pbv-mir-27a MIR-27 GGGCUUA MIMAT0038861 MIMAT0038862 KE953590.1 99842 99903 - Gnathostomata Vertebrata Yes 1
Cpo-Mir-27-P3 cpo-mir-27a MIR-27 UCACAGU MIMAT0046890 MIMAT0046891 scaffold_42 12931848 12931908 + Gnathostomata Vertebrata No 1
Gja-Mir-27-P3 None MIR-27 UCACAGU None None NW_015175453.1 135915 135976 - Gnathostomata Vertebrata Yes 1
Ocu-Mir-27-P3 None MIR-27 UCACAGU None None VIYN01006261.1 192288 192349 - Gnathostomata Vertebrata No 1
Cfa-Mir-27-P3 cfa-mir-27a MIR-27 UCACAGU None MIMAT0006641 chr20 48620555 48620616 + Gnathostomata Vertebrata No 1
Bta-Mir-27-P3 bta-mir-27a MIR-27 UCACAGU MIMAT0012532 MIMAT0003532 NC_037334.1 11838890 11838950 + Gnathostomata Vertebrata No 1
Xtr-Mir-27-P3 xtr-mir-27a MIR-27 UCACAGU None MIMAT0003570 chr3 129999287 129999348 + Gnathostomata Vertebrata No 1
Dno-Mir-27-P3 dno-mir-27a MIR-27 UCACAGU MIMAT0047543 MIMAT0047544 AAGV03195862 315 376 + Gnathostomata Vertebrata No 1
Ete-Mir-27-P3 None MIR-27 UCACAGU None None JH980397 3706321 3706382 + Gnathostomata Vertebrata No 1
Lch-Mir-27-P3 None MIR-27 UCACAGU None None JH126758.1 377934 377995 - Gnathostomata Vertebrata Unknown
Sha-Mir-27-P3 None MIR-27 UCACAGU None None GL841415.1 821157 821219 + Gnathostomata Vertebrata No
Tni-Mir-27-P3 tni-mir-27c MIR-27 UCACAGU None MIMAT0003078 3 8970188 8970245 + Gnathostomata Vertebrata No 1 1
Mdo-Mir-27-P3 mdo-mir-27a MIR-27 UCACAGU MIMAT0026711 MIMAT0004174 3 446526008 446526070 + Gnathostomata Vertebrata No
Gmo-Mir-27-P3 gmo-mir-27c MIR-27 UCACAGU MIMAT0044332 MIMAT0044333 scaffold03886 4252 4313 - Gnathostomata Vertebrata No 1 1
Gga-Mir-27-P3 None MIR-27 UCACAGU None None 30 1398469 1398524 + Gnathostomata Vertebrata Yes
Dre-Mir-27-P3 dre-mir-27c MIR-27 UCACAGU MIMAT0003401 MIMAT0001798 chr3 13406464 13406527 + Gnathostomata Vertebrata No 1
Loc-Mir-27-P3 None MIR-27 UCACAGU None None LG6 12902378 12902439 - Gnathostomata Vertebrata No 1
Xla-Mir-27-P3d None MIR-27 UCACAGU None None NW_016694811.1 2508699 2508760 + X. laevis Vertebrata No 1
Sto-Mir-27-P4 None MIR-27 AGAACUU None None BFAA01000014.1 1438467 1438532 + Gnathostomata Vertebrata No
Cmi-Mir-27-P4 None MIR-27 UCACAGU None None KI635918.1 1565842 1565904 + Gnathostomata Vertebrata Yes
Xtr-Mir-27-P4 xtr-mir-27c-1 MIR-27 UCACAGU None MIMAT0003675 chr4 73605412 73605473 + Gnathostomata Vertebrata No
Lch-Mir-27-P4 None MIR-27 UCACAGU None None JH127091.1 1152893 1152956 - Gnathostomata Vertebrata Unknown 1
Loc-Mir-27-P4 None MIR-27 UCACAGU None None LG19 5780510 5780573 + Gnathostomata Vertebrata No
Ebu-Mir-27-P5 None MIR-27 UCACAGU None None FYBX02009499.1 1849044 1849106 - E. burgeri Vertebrata No 1 1
Mal-Mir-27-P2a None MIR-27 UCACAGU None None KV884846.1 922849 922910 + Clupeocephala Vertebrata No
Dre-Mir-27-P2a dre-mir-27d MIR-27 UCACAGU None MIMAT0001799 chr10 15954740 15954804 + Clupeocephala Vertebrata No
Sto-Mir-27-P3a None MIR-27 GGACUUA None None BFAA01001728.1 154600 154664 - S. torazame Vertebrata No
Tni-Mir-27-P4a tni-mir-27e MIR-27 UCACAGU None MIMAT0003068 1 16059190 16059253 + Clupeocephala Vertebrata No
Gmo-Mir-27-P4a gmo-mir-27a-2 MIR-27 UCACAGU MIMAT0044101 MIMAT0044102 GeneScaffold_1112 350547 350610 - Clupeocephala Vertebrata No
Mal-Mir-27-P4a None MIR-27 UCACAGU None None KV884817.1 552481 552544 - Clupeocephala Vertebrata No
Dre-Mir-27-P4a dre-mir-27e MIR-27 UCACAGU None MIMAT0001800 chr22 5299972 5300035 + Clupeocephala Vertebrata No
Tni-Mir-27-P2b tni-mir-27b MIR-27 UCACAGU None MIMAT0002952 12 8516519 8516581 + Clupeocephala Vertebrata No 1
Gmo-Mir-27-P2b gmo-mir-27b MIR-27 UCACAGU MIMAT0044008 MIMAT0044009 contig145249 115 177 - Clupeocephala Vertebrata No 1
Mal-Mir-27-P2b None MIR-27 UCACAGU None None KV884708.1 577864 577926 + Clupeocephala Vertebrata No
Dre-Mir-27-P2b dre-mir-27b MIR-27 UCACAGU MIMAT0031950 MIMAT0001797 chr8 30167449 30167508 - Clupeocephala Vertebrata No 1
Sto-Mir-27-P3b None MIR-27 UCACAGU None None BFAA01332160.1 683 746 - S. torazame Vertebrata No
Tni-Mir-27-P4b None MIR-27 UCACAGU None None 15_random 2810064 2810128 + Clupeocephala Vertebrata No
Gmo-Mir-27-P4b gmo-mir-27a-1 MIR-27 UCACAGU None MIMAT0044102 GeneScaffold_2105 1930293 1930354 + Clupeocephala Vertebrata No
Mal-Mir-27-P4b None MIR-27 UCACAGU None None KV884702.1 2269816 2269878 + Clupeocephala Vertebrata No
Xla-Mir-27-P2c xla-mir-27b MIR-27 UCACAGU MIMAT0046560 MIMAT0046561 NC_030724.1 133829110 133829172 + X. laevis Vertebrata No 1

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