MirGeneDB 2.1

36 microRNA genes with seed CCACAGG
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Ebu-Mir-140-P3-v1 None MIR-140 AGUGGUU None None FYBX02009326.1 825017 825077 - E. burgeri Vertebrata No 1 1
Spt-Mir-140-P1 None MIR-140 CCACAGG None None QEPC01000412.1 2298530 2298591 - Gnathostomata Vertebrata Unknown 1
Lch-Mir-140-P1 None MIR-140 CCACAGG None None JH127961.1 491090 491151 + Gnathostomata Vertebrata Unknown
Pma-Mir-140-o3 None MIR-140 CCACAGG None None PIZI01000964.1 4177 4240 + P. marinus Vertebrata No 1
Tgu-Mir-140-P1-v1 tgu-mir-140 MIR-140 CCACAGG MIMAT0014557 MIMAT0014642 11 11586546 11586607 + Gnathostomata Vertebrata No 1
Sto-Mir-140-P1-v1 None MIR-140 CCACAGG None None BFAA01000092.1 252505 252566 + Gnathostomata Vertebrata No
Hsa-Mir-140-P1-v1 hsa-mir-140 MIR-140 CCACAGG MIMAT0000431 MIMAT0004597 chr16 69933103 69933164 + Gnathostomata Vertebrata No 1
Ami-Mir-140-P1-v1 ami-mir-140 MIR-140 CCACAGG MIMAT0038160 MIMAT0038161 NW_017709930.1 237938 237999 + Gnathostomata Vertebrata No
Cmi-Mir-140-P1-v1 None MIR-140 CCACAGG None None KI635866.1 3585272 3585333 - Gnathostomata Vertebrata No 1
Mml-Mir-140-P1-v1 mml-mir-140 MIR-140 CCACAGG MIMAT0006197 MIMAT0006198 chr20 54375584 54375645 + Gnathostomata Vertebrata No 1
Cpi-Mir-140-P1-v1 cpi-mir-140 MIR-140 CCACAGG MIMAT0037764 MIMAT0037765 JH584945 517644 517705 - Gnathostomata Vertebrata No 1
Mmu-Mir-140-P1-v1 mmu-mir-140 MIR-140 CCACAGG MIMAT0000151 MIMAT0000152 chr8 107551249 107551310 + Gnathostomata Vertebrata No 1
Aca-Mir-140-P1-v1 aca-mir-140 MIR-140 CCACAGG MIMAT0021765 MIMAT0021766 GL343643.1 205834 205895 + Gnathostomata Vertebrata No 1
Rno-Mir-140-P1-v1 rno-mir-140 MIR-140 CCACAGG MIMAT0000573 MIMAT0000574 chr19 39608972 39609033 + Gnathostomata Vertebrata No 1
Cpo-Mir-140-P1-v1 cpo-mir-140 MIR-140 CCACAGG MIMAT0047004 MIMAT0047005 scaffold_22 6810958 6811019 - Gnathostomata Vertebrata No 1
Gja-Mir-140-P1-v1 None MIR-140 CCACAGG None None NW_015163100.1 1368704 1368765 + Gnathostomata Vertebrata No 1 1
Ocu-Mir-140-P1-v1 ocu-mir-140 MIR-140 CCACAGG MIMAT0048241 MIMAT0048242 chr5 25337165 25337226 + Gnathostomata Vertebrata No 1
Cfa-Mir-140-P1-v1 cfa-mir-140 MIR-140 CCACAGG None MIMAT0006689 chr5 79814255 79814316 - Gnathostomata Vertebrata No 1
Bta-Mir-140-P1-v1 bta-mir-140 MIR-140 CCACAGG None MIMAT0003789 NC_037345.1 36962029 36962090 + Gnathostomata Vertebrata No 1
Xtr-Mir-140-P1-v1 xtr-mir-140 MIR-140 CCACAGG MIMAT0003601 None chr4 62459953 62460014 + Gnathostomata Vertebrata No 1
Dno-Mir-140-P1-v1 dno-mir-140 MIR-140 CCACAGG MIMAT0047653 MIMAT0047654 JH569970 120638 120699 - Gnathostomata Vertebrata No 1
Mun-Mir-140-P1-v1 None MIR-140 CCACAGG None None 140-P1-v1_LR594636.1:360792593-360792854 101 162 + Gnathostomata Vertebrata No
Ete-Mir-140-P1-v1 None MIR-140 CCACAGG None None JH980312 15985822 15985883 - Gnathostomata Vertebrata No 1
Sha-Mir-140-P1-v1 sha-mir-140 MIR-140 CCACAGG None MIMAT0022778 GL834769.1 1909560 1909621 + Gnathostomata Vertebrata No
Tni-Mir-140-P1-v1 tni-mir-140 MIR-140 CCACAGG MIMAT0003025 None 13 1172500 1172561 + Gnathostomata Vertebrata No 1 1
Mdo-Mir-140-P1-v1 mdo-mir-140 MIR-140 CCACAGG MIMAT0012745 MIMAT0026937 1 699870962 699871023 + Gnathostomata Vertebrata No
Gmo-Mir-140-P1-v1 gmo-mir-140 MIR-140 CCACAGG MIMAT0044299 MIMAT0044300 GeneScaffold_497 168347 168408 - Gnathostomata Vertebrata No 1 1
Oan-Mir-140-P1-v1 oan-mir-140 MIR-140 CCACAGG MIMAT0006812 MIMAT0006813 NC_041738.1 39776980 39777041 - Gnathostomata Vertebrata No
Mal-Mir-140-P1-v1 None MIR-140 CCACAGG None None KV885061.1 918110 918171 - Gnathostomata Vertebrata No 1 1
Gga-Mir-140-P1-v1 gga-mir-140 MIR-140 CCACAGG MIMAT0001159 MIMAT0003722 11 19068678 19068739 + Gnathostomata Vertebrata No 1
Dre-Mir-140-P1-v1 dre-mir-140 MIR-140 CCACAGG MIMAT0001836 MIMAT0003159 chr25 34791384 34791445 + Gnathostomata Vertebrata No 1
Cli-Mir-140-P1-v1 cli-mir-140 MIR-140 CCACAGG MIMAT0038527 MIMAT0038528 scaffold123 5480472 5480533 - Gnathostomata Vertebrata No 1
Loc-Mir-140-P1-v1 None MIR-140 CCACAGG None None LG23 5630089 5630150 - Gnathostomata Vertebrata No
Ebu-Mir-140-P4-v1 None MIR-140 CCACAGG None None FYBX02008842.1 1778408 1778469 - E. burgeri Vertebrata No 1
Xla-Mir-140-P1a-v1 xla-mir-140-1 MIR-140 CCACAGG MIMAT0046452 MIMAT0046453 NC_030730.1 49672494 49672555 - X. laevis Vertebrata No 1
Xla-Mir-140-P1b-v1 xla-mir-140-2 MIR-140 CCACAGG MIMAT0046452 MIMAT0046453 NC_030731.1 41460369 41460430 - X. laevis Vertebrata No 1

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