MirGeneDB 2.1

112 microRNA genes with seed CCCUGUA
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Dno-Mir-10-P1b-v2 dno-mir-10b MIR-10 CCCUGUA MIMAT0047499 MIMAT0047500 JH575655 3701010 3701069 + Gnathostomata Eumetazoa No
Dre-Mir-10-P1b1-v2 dre-mir-10b-1 MIR-10 CCCUGUA MIMAT0001268 MIMAT0031919 chr9 1952964 1953023 - Clupeocephala Eumetazoa No
Sha-Mir-10-P1b-v2 sha-mir-10b MIR-10 CCCUGUA MIMAT0022799 None GL849635.1 2022372 2022431 + Gnathostomata Eumetazoa No
Dsi-Mir-10-P1 dsi-mir-10 MIR-10 CCCUGUA MIMAT0008887 None 3R 2529742 2529804 - Bilateria Eumetazoa No 1
Dre-Mir-10-P1d1-v2 dre-mir-10b-2 MIR-10 CCCUGUA MIMAT0001268 MIMAT0031934 chr23 36130017 36130077 + Clupeocephala Eumetazoa Unknown
Aae-Mir-10-P1-v1 aae-mir-10 MIR-10 CCCUGUA MIMAT0014277 None supercont1.440 813557 813619 + Bilateria Eumetazoa No
Cpo-Mir-10-P1c-v2 cpo-mir-10a MIR-10 CCCUGUA MIMAT0046845 MIMAT0046846 scaffold_53 8675060 8675120 + Gnathostomata Eumetazoa No 1
Cmi-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None KI635976.1 1292316 1292376 + Gnathostomata Eumetazoa No 1
Dma-Mir-10-P1-v1 None MIR-10 CCCUGUA None None NC_046178.1 8231923 8231981 + Bilateria Eumetazoa No 1
Csc-Mir-10-P1q3 None MIR-10 CCCUGUA None None NW_019384341.1 336262 336320 - C. sculpturatus Eumetazoa Unknown 1
Lpo-Mir-10-P1n-v1 None MIR-10 CCCUGUA None None NW_013668646.1 77832 77889 - L. polyphemus Eumetazoa No 1
Tni-Mir-10-P1b1-v2 tni-mir-10b-2 MIR-10 CCCUGUA MIMAT0002964 None 2 13424291 13424350 - Clupeocephala Eumetazoa Unknown
Ami-Mir-10-P1d-v2 ami-mir-10c MIR-10 CCCUGUA MIMAT0038034 MIMAT0038035 NW_017708254.1 346318 346377 + Gnathostomata Eumetazoa No
Mml-Mir-10-P1b-v2 mml-mir-10b MIR-10 CCCUGUA MIMAT0006162 MIMAT0026798 chr12 63173274 63173333 + Gnathostomata Eumetazoa No
Oan-Mir-10-P1b-v2 oan-mir-10b MIR-10 CCCUGUA MIMAT0007218 MIMAT0007219 NC_041736.1 19531514 19531573 + Gnathostomata Eumetazoa No
Gga-Mir-10-P1d-v2 None MIR-10 CCCUGUA None None None None None None Gnathostomata Eumetazoa No
Tgu-Mir-10-P1b-v2 tgu-mir-10a MIR-10 CCCUGUA MIMAT0018618 MIMAT0027035 7 16417454 16417513 + Gnathostomata Eumetazoa No
Cfa-Mir-10-P1c-v2 cfa-mir-10a MIR-10 CCCUGUA MIMAT0006737 None chr9 24842172 24842232 - Gnathostomata Eumetazoa No 1
Mal-Mir-10-P1c2a-v2 None MIR-10 CCCUGUA None None KV884755.1 566953 567013 - M. albus Eumetazoa Unknown 1 1
Xtr-Mir-10-P1b-v2 xtr-mir-10b MIR-10 CCCUGUA MIMAT0003558 None chr9 59969715 59969772 + Gnathostomata Eumetazoa No
Csc-Mir-10-P1r None MIR-10 CCCUGUA None None NW_019384862.1 289996 290055 + C. sculpturatus Eumetazoa Unknown
Mun-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None 10-P1d-v1_LR594643.1:63956865-63957127 102 162 + Gnathostomata Eumetazoa No 1
Aca-Mir-10-P1b-v2 aca-mir-10b MIR-10 CCCUGUA MIMAT0021719 MIMAT0021720 GL343356.1 481997 482056 - Gnathostomata Eumetazoa No
Pbv-Mir-10-P1c-v2 pbv-mir-10a MIR-10 CCCUGUA MIMAT0038824 MIMAT0038825 KE955436.1 47290 47349 + Gnathostomata Eumetazoa No 1
Gmo-Mir-10-P1b1-v2 gmo-mir-10a-1 MIR-10 CCCUGUA MIMAT0044088 MIMAT0044089 GeneScaffold_1009 374096 374156 - Clupeocephala Eumetazoa No 1
Gja-Mir-10-P1d-v2 None MIR-10 CCCUGUA None None NW_015167536.1 410035 410092 - Gnathostomata Eumetazoa Unknown
Gmo-Mir-10-P1d1-v2 gmo-mir-10a-2 MIR-10 CCCUGUA MIMAT0044088 None GeneScaffold_1797 154031 154090 + Clupeocephala Eumetazoa No
Xla-Mir-10-P1c3-v2 xla-mir-10a MIR-10 CCCUGUA MIMAT0046422 MIMAT0046423 NC_030740.1 3499573 3499632 - X. laevis Eumetazoa No 1
Dno-Mir-10-P1c-v2 dno-mir-10a MIR-10 CCCUGUA MIMAT0047497 MIMAT0047498 JH562571 188562 188622 - Gnathostomata Eumetazoa No 1
Dre-Mir-10-P1b2-v2 dre-mir-10d MIR-10 CCCUGUA MIMAT0001771 MIMAT0003394 chr6 10867052 10867111 + Clupeocephala Eumetazoa No
Sha-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None GL856828.1 1035015 1035075 - Gnathostomata Eumetazoa No 1
Dya-Mir-10-P1 dya-mir-10 MIR-10 CCCUGUA MIMAT0009082 None 3R 7778013 7778075 + Bilateria Eumetazoa No 1
Loc-Mir-10-P1b-v2 None MIR-10 CCCUGUA None None LG12 15544685 15544744 - Gnathostomata Eumetazoa No
Rno-Mir-10-P1b-v2 rno-mir-10b MIR-10 CCCUGUA MIMAT0000783 MIMAT0017092 chr3 61648004 61648063 + Gnathostomata Eumetazoa No
Sto-Mir-10-P1b-v2 None MIR-10 CCCUGUA None None BFAA01001523.1 62107 62163 - Gnathostomata Eumetazoa No
Bge-Mir-10-P1-v1 None MIR-10 CCCUGUA None None KZ614729.1 496542 496599 - Bilateria Eumetazoa No 1
Ocu-Mir-10-P1b-v2 ocu-mir-10b MIR-10 CCCUGUA MIMAT0048099 MIMAT0048100 chr7 115709576 115709635 + Gnathostomata Eumetazoa No
Cmi-Mir-10-P1d-v2 None MIR-10 CCCUGUA None None KI636119.1 284356 284415 + Gnathostomata Eumetazoa No
Lpo-Mir-10-P1k-v1 None MIR-10 CCCUGUA None None NW_013666572.1 345853 345911 + L. polyphemus Eumetazoa No 1
Lpo-Mir-10-P1o-v1 None MIR-10 CCCUGUA None None NW_013678333.1 8113 8170 + L. polyphemus Eumetazoa No 1
Cpi-Mir-10-P1b-v2 cpi-mir-10b MIR-10 CCCUGUA MIMAT0037627 MIMAT0037628 JH584712 2217469 2217528 + Gnathostomata Eumetazoa No
Mml-Mir-10-P1c-v2 mml-mir-10a MIR-10 CCCUGUA MIMAT0006161 MIMAT0026797 chr16 41307387 41307447 + Gnathostomata Eumetazoa No 1
Oan-Mir-10-P1c-v2 oan-mir-10a MIR-10 CCCUGUA MIMAT0007122 MIMAT0007123 NC_041738.1 58283265 58283325 - Gnathostomata Eumetazoa No 1
Hme-Mir-10-P1-v1 hme-mir-10 MIR-10 CCCUGUA MIMAT0024932 None HE667778 152725 152782 - Bilateria Eumetazoa No 1
Cli-Mir-10-P1b-v2 cli-mir-10b MIR-10 CCCUGUA MIMAT0038406 MIMAT0038407 scaffold893 612556 612615 - Gnathostomata Eumetazoa No
Tgu-Mir-10-P1c-v2 tgu-mir-10a MIR-10 CCCUGUA MIMAT0018618 MIMAT0027035 gnl|ti|1257183866 638 698 + Gnathostomata Eumetazoa No
Isc-Mir-10-P1-v1 isc-mir-10 MIR-10 CCCUGUA MIMAT0012682 None DS891538 2780820 2780877 + Bilateria Eumetazoa No 1
Bta-Mir-10-P1b-v2 bta-mir-10b MIR-10 CCCUGUA MIMAT0003839 None NC_037329.1 20762762 20762821 - Gnathostomata Eumetazoa No
Mal-Mir-10-P1c2b-v2 None MIR-10 CCCUGUA None None KV884755.1 546073 546133 - M. albus Eumetazoa Unknown 1 1
Xtr-Mir-10-P1c-v2 xtr-mir-10a MIR-10 CCCUGUA MIMAT0003557 None chr10 5060953 5061013 - Gnathostomata Eumetazoa No 1 1
Mun-Mir-10-P1d-v2 None MIR-10 CCCUGUA None None 10-P1c-v2_LR594634.1:315264575-315264716 42 101 - Gnathostomata Eumetazoa Unknown
Aca-Mir-10-P1c-v2 aca-mir-10a MIR-10 CCCUGUA MIMAT0021717 MIMAT0021718 6 75570728 75570787 - Gnathostomata Eumetazoa No 1
Tni-Mir-10-P1c1-v2 tni-mir-10c MIR-10 CCCUGUA MIMAT0003088 None Un_random 5507316 5507379 - Clupeocephala Eumetazoa No 1
Pbv-Mir-10-P1d-v2 pbv-mir-10b-2 MIR-10 CCCUGUA MIMAT0038826 MIMAT0038828 KE953310.1 36710 36767 + Gnathostomata Eumetazoa No
Gmo-Mir-10-P1b2-v2 gmo-mir-10b MIR-10 CCCUGUA MIMAT0044188 None GeneScaffold_2339 30813 30869 + Clupeocephala Eumetazoa Unknown 1
Xla-Mir-10-P1c4-v2 None MIR-10 CCCUGUA None None NC_030741.1 3133740 3133799 - X. laevis Eumetazoa No 1
Ete-Mir-10-P1b-v2 None MIR-10 CCCUGUA None None JH980302 1714259 1714318 + Gnathostomata Eumetazoa No
Dre-Mir-10-P1c1-v2 dre-mir-10c MIR-10 CCCUGUA MIMAT0001770 MIMAT0031935 chr3 23720667 23720727 + Clupeocephala Eumetazoa No 1
Mdo-Mir-10-P1b-v2 mdo-mir-10b MIR-10 CCCUGUA MIMAT0004090 MIMAT0026649 4 187496051 187496110 + Gnathostomata Eumetazoa No
Dan-Mir-10-P1 dan-mir-10 MIR-10 CCCUGUA MIMAT0008476 None scaffold_13340 5417376 5417438 + Bilateria Eumetazoa No 1
Loc-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None LG15 9188974 9189034 - Gnathostomata Eumetazoa No 1
Rno-Mir-10-P1c-v2 rno-mir-10a MIR-10 CCCUGUA MIMAT0000782 MIMAT0004709 chr10 84165972 84166032 + Gnathostomata Eumetazoa No 1
Sto-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None BFAA01000145.1 326956 327016 - Gnathostomata Eumetazoa No 1
Ocu-Mir-10-P1c-v2 ocu-mir-10a MIR-10 CCCUGUA MIMAT0048097 MIMAT0048098 chr19 38782600 38782660 + Gnathostomata Eumetazoa No 1
Lpo-Mir-10-P1l-v1 None MIR-10 CCCUGUA None None NW_013665747.1 245823 245879 - L. polyphemus Eumetazoa No
Lpo-Mir-10-P1p-v1 None MIR-10 CCCUGUA None None NW_013668868.1 9884 9943 - L. polyphemus Eumetazoa No
Mal-Mir-10-P1b1-v2 None MIR-10 CCCUGUA None None KV884718.1 892127 892186 + Clupeocephala Eumetazoa Unknown
Bta-Mir-10-P1c-v2 bta-mir-10a MIR-10 CCCUGUA MIMAT0003786 None NC_037346.1 37912325 37912385 + Gnathostomata Eumetazoa No 1
Hsa-Mir-10-P1b-v2 hsa-mir-10b MIR-10 CCCUGUA MIMAT0000254 MIMAT0004556 chr2 176150330 176150389 + Gnathostomata Eumetazoa No
Mmu-Mir-10-P1b-v2 mmu-mir-10b MIR-10 CCCUGUA MIMAT0000208 MIMAT0004538 chr2 74726075 74726134 + Gnathostomata Eumetazoa No
Gga-Mir-10-P1b-v2 gga-mir-10b MIR-10 CCCUGUA MIMAT0001148 MIMAT0026521 7 16278930 16278989 - Gnathostomata Eumetazoa No
Cli-Mir-10-P1c-v2 cli-mir-10a MIR-10 CCCUGUA MIMAT0038404 MIMAT0038405 scaffold265 1564494 1564553 + Gnathostomata Eumetazoa No 1
Dpu-Mir-10-P1-v1 dpu-mir-10 MIR-10 CCCUGUA MIMAT0012636 None DAPPUscaffold_7 304826 304884 - Bilateria Eumetazoa No 1
Ami-Mir-10-P1b-v2 ami-mir-10b MIR-10 CCCUGUA MIMAT0038032 MIMAT0038033 NW_017714267.1 6396789 6396848 - Gnathostomata Eumetazoa No
Mal-Mir-10-P1d1-v2 None MIR-10 CCCUGUA None None KV884694.1 1805181 1805240 - Clupeocephala Eumetazoa No
Xtr-Mir-10-P1d-v2 xtr-mir-10c MIR-10 CCCUGUA MIMAT0003559 None chr2 142821737 142821793 - Gnathostomata Eumetazoa No
Cpi-Mir-10-P1c-v2 cpi-mir-10a MIR-10 CCCUGUA MIMAT0037625 MIMAT0037626 JH584731 2427011 2427070 - Gnathostomata Eumetazoa Unknown 1
Aca-Mir-10-P1d-v2 aca-mir-10c MIR-10 CCCUGUA MIMAT0021721 MIMAT0021722 2 71991632 71991689 - Gnathostomata Eumetazoa No
Tni-Mir-10-P1c2-v2 None MIR-10 CCCUGUA None None 2 1745677 1745737 - Clupeocephala Eumetazoa Unknown 1 1
Gja-Mir-10-P1b-v2 None MIR-10 CCCUGUA None None NW_015165302.1 170054 170113 - Gnathostomata Eumetazoa No
Gmo-Mir-10-P1c1-v2 gmo-mir-10c MIR-10 CCCUGUA MIMAT0044225 MIMAT0044226 GeneScaffold_3558 107635 107698 + Clupeocephala Eumetazoa No 1
Xla-Mir-10-P1b3-v2 xla-mir-10b MIR-10 CCCUGUA MIMAT0046424 MIMAT0046425 NC_030740.1 67996929 67996988 - X. laevis Eumetazoa No
Xla-Mir-10-P1d3-v2 None MIR-10 CCCUGUA None None NC_030726.1 148240764 148240820 - X. laevis Eumetazoa No
Csc-Mir-10-P1q1 None MIR-10 CCCUGUA None None NW_019384341.1 354570 354628 - C. sculpturatus Eumetazoa Unknown 1
Ete-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None JH980319 25189333 25189393 + Gnathostomata Eumetazoa Unknown 1
Dme-Mir-10-P1 dme-mir-10 MIR-10 CCCUGUA MIMAT0000115 MIMAT0012531 3R 6809512 6809574 - Bilateria Eumetazoa No 1
Dre-Mir-10-P1c2-v2 dre-mir-10a MIR-10 CCCUGUA MIMAT0001267 MIMAT0003391 chr12 27134887 27134943 + Clupeocephala Eumetazoa No 1
Mdo-Mir-10-P1c-v2 mdo-mir-10a MIR-10 CCCUGUA MIMAT0004089 MIMAT0026648 2 201156746 201156806 - Gnathostomata Eumetazoa No 1
Dmo-Mir-10-P1 dmo-mir-10 MIR-10 CCCUGUA MIMAT0008693 None scaffold_6540 16502920 16502982 + Bilateria Eumetazoa No 1
Loc-Mir-10-P1d-v2 None MIR-10 CCCUGUA None None LG4 15933792 15933850 + Gnathostomata Eumetazoa No
Cpo-Mir-10-P1b-v2 cpo-mir-10b MIR-10 CCCUGUA MIMAT0046847 MIMAT0046848 scaffold_3 14161470 14161529 - Gnathostomata Eumetazoa No
Cmi-Mir-10-P1b-v2 None MIR-10 CCCUGUA None None KI635868.1 5155563 5155619 + Gnathostomata Eumetazoa No
Lpo-Mir-10-P1m-v1 None MIR-10 CCCUGUA None None NW_013666465.1 260670 260726 - L. polyphemus Eumetazoa No
Ami-Mir-10-P1c-v2 ami-mir-10a MIR-10 CCCUGUA MIMAT0038030 MIMAT0038031 NW_017708231.1 3410198 3410257 - Gnathostomata Eumetazoa No 1
Csc-Mir-10-P1q2 None MIR-10 CCCUGUA None None NW_019384341.1 345313 345371 - C. sculpturatus Eumetazoa Unknown 1
Hsa-Mir-10-P1c-v2 hsa-mir-10a MIR-10 CCCUGUA MIMAT0000253 MIMAT0004555 chr17 48579865 48579925 - Gnathostomata Eumetazoa No 1
Mmu-Mir-10-P1c-v2 mmu-mir-10a MIR-10 CCCUGUA MIMAT0000648 MIMAT0004659 chr11 96317187 96317247 + Gnathostomata Eumetazoa No 1
Gga-Mir-10-P1c-v2 gga-mir-10a MIR-10 CCCUGUA MIMAT0007731 MIMAT0007732 27 6242497 6242556 + Gnathostomata Eumetazoa No 1
Tca-Mir-10-P1-v1 tca-mir-10 MIR-10 CCCUGUA MIMAT0008357 MIMAT0019101 LG2 8460384 8460441 + Bilateria Eumetazoa No 1
Cli-Mir-10-P1d-v2 cli-mir-10c MIR-10 CCCUGUA MIMAT0038408 MIMAT0038409 scaffold922 255117 255176 + Gnathostomata Eumetazoa No
Cfa-Mir-10-P1b-v2 cfa-mir-10b MIR-10 CCCUGUA MIMAT0009837 None chr36 19958931 19958990 + Gnathostomata Eumetazoa No
Mun-Mir-10-P1b-v2 None MIR-10 CCCUGUA None None 10-P1b-v2_LR594638.1:221812833-221812974 42 101 - Gnathostomata Eumetazoa Unknown
Cpi-Mir-10-P1d-v2 cpi-mir-10c MIR-10 CCCUGUA MIMAT0037629 MIMAT0037630 JH584844 1020367 1020426 - Gnathostomata Eumetazoa No
Pbv-Mir-10-P1b-v2 pbv-mir-10b-1 MIR-10 CCCUGUA MIMAT0038826 MIMAT0038827 KE953519.1 219089 219148 + Gnathostomata Eumetazoa No
Tni-Mir-10-P1d1-v2 tni-mir-10b-1 MIR-10 CCCUGUA MIMAT0002964 None 9 4255307 4255365 + Clupeocephala Eumetazoa Unknown
Gja-Mir-10-P1c-v2 None MIR-10 CCCUGUA None None NW_015168072.1 295318 295377 + Gnathostomata Eumetazoa No 1
Gmo-Mir-10-P1c2-v2 gmo-mir-10d MIR-10 CCCUGUA MIMAT0044307 MIMAT0044308 GeneScaffold_565 163216 163273 - Clupeocephala Eumetazoa No 1 1
Xla-Mir-10-P1b4-v2 None MIR-10 CCCUGUA None None NC_030741.1 62207499 62207556 - X. laevis Eumetazoa No
Mal-Mir-10-P1c1-v2 None MIR-10 CCCUGUA None None KV884780.1 273803 273866 + Clupeocephala Eumetazoa Unknown 1
Xla-Mir-10-P1d4-v2 None MIR-10 CCCUGUA None None None None None None X. laevis Eumetazoa No
Hme-Mir-2756 hme-mir-2756 MIR-2756 CCCUGUA MIMAT0024953 None HE672079 296638 296695 + H. melpomene H. melpomene No 1
Bta-Mir-2367 bta-mir-2367 MIR-2367 CCCUGUA MIMAT0011909 MIMAT0011910 NC_037349.1 11368936 11368994 + B. taurus B. taurus No 1

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