MirGeneDB 2.1

MirGeneDB ID

Xtr-Novel-2

Family name AMP-NOVEL-2 (all species)
Seed GAGGCUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Mun-Novel-2 
Node of Origin (locus) Amphibia
Node of Origin (family) Amphibia
Genome context
(xenTro9_add)
chr5: 86772848-86772905 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCCUCAGGAGGAUGCCAUUGGAGCUGCAUUGAGGCUUCCUACUUCAAGGCUGUGUUCUGACUCAUCCUAGAAGCUUGAAGCCUAGCUGCAUCUUCAACAGAGACGCACAGGAAUCUG
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Structure
        10          20        30        40        50        
ACCCUCAGGAGGAUGCCA--|     C    UUG       CUA    A   C  UGUU 
                    UUGGAG UGCA   AGGCUUC   CUUC AGG UG    C
                    AACUUC ACGU   UCCGAAG   GAAG UCC AC    U
GUCUAAGGACACGCAGAGAC^     U    CGA       UUC    A   U  UCAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Novel-2_5p

mirBase accessionNone
Sequence
0- UGAGGCUUCCUACUUCAAGGCUG -23
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Co-mature sequence

Xtr-Novel-2_3p

mirBase accessionNone
Sequence
35- UCCUAGAAGCUUGAAGCCUAGCU -58
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