| MirGeneDB ID | Xtr-Novel-1 |
|---|
| Family name |
AMP-NOVEL-1 (all species) |
|---|
| Seed |
AUCGCGU |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
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| Paralogues |
|
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| Orthologues |
Mun-Novel-1
Xla-Novel-1-P1
Xla-Novel-1-P2
|
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| Node of Origin (locus) |
Amphibia
|
|---|
| Node of Origin (family) |
Amphibia
|
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Genome context
(xenTro9_add) |
chr1: 67947782-67947839 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCCAACAUCUUUGAUUACUGCUUCACGUUGCAUCGCGUUAACCGGAAGUCUCAUGUUUCAUUGUGGGACUUCUGGGUGACACGACGUGAUGUGAUGUGGCAUCCAUCGAGAAUAGGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCCAACAUCUUUGAUUA--|UG U UG A C A AUGUU
C C UCACGU C UCG GUUA CCGGAAGUCUC U
G G AGUGUA G AGC CAGU GGUCUUCAGGG C
AGGGAUAAGAGCUACCUAC^GU U GU C A G UGUUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xtr-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCGCGUUAACCGGAAGUCUC -22
Get sequence
|
|---|
| Star sequence |
Xtr-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- GACUUCUGGGUGACACGACGUG -58
Get sequence
|
|---|
