Mir-8-P2a

MirGeneDB ID

Xtr-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-200a

Paralogues

Xtr-Mir-8-P1a Xtr-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cgi-Mir-8 Cin-Mir-8-P2 Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Hme-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mml-Mir-8-P2a Mmu-Mir-8-P2a Mun-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ovu-Mir-8 Pbv-Mir-8-P2a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P2a Sha-Mir-8-P2a Sko-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Xla-Mir-8-P2a1 Xla-Mir-8-P2a2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr7: 78800615-78800675 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P3a chr7: 78797789-78797847 [-] UCSC Ensembl
Mir-8-P2a chr7: 78800615-78800675 [-] UCSC Ensembl
Mir-8-P1a chr7: 78802291-78802350 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUUUGCAGAAGGAUGGUCCUCUAUGGACAUCUUACUAGACAGUGCUGGAUUUAUUUUAUCUUUUCUAACACUGUCUGGUAACGAUGUUUAAAGAGUGAGCCAAUGUACUUCGUGUUCC

Get precursor sequence

Structure

        10         20         30         40        50         
CUCCUUUGCAGAAGGAUGG-  -    A        -|            C    UUUAUU 
                    UC CUCU UGGACAUC UUACUAGACAGUG UGGA      U
                    AG GAGA AUUUGUAG AAUGGUCUGUCAC AUCU      U
CCUUGUGCUUCAUGUAACCG  U    A        C^            A    UUUCUA 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Em	Em	Em	Em	He

Star sequence

Xtr-Mir-8-P2a_5p*

mirBase accession

None

Sequence

0- CAUCUUACUAGACAGUGCUGGA -22

Get sequence

Mature sequence

Xtr-Mir-8-P2a_3p

mirBase accession

MIMAT0003693

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

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Proposed targets

TargetScanVert: xtr-miR-200a