MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-8-P1a

Family name MIR-8 (all species)
Seed AAUACUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-200b
Paralogues Xtr-Mir-8-P2a  Xtr-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Ami-Mir-8-P1a  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cgi-Mir-8  Cin-Mir-8-P1  Cli-Mir-8-P1a  Cmi-Mir-8-P1a  Cpi-Mir-8-P1a  Cpo-Mir-8-P1a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dpu-Mir-8  Dre-Mir-8-P1a  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P1a  Gga-Mir-8-P1a  Gja-Mir-8-P1a  Gmo-Mir-8-P1a  Hme-Mir-8  Hsa-Mir-8-P1a  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P1a  Lgi-Mir-8  Loc-Mir-8-P1a  Mal-Mir-8-P1a  Mdo-Mir-8-P1a  Mml-Mir-8-P1a  Mmu-Mir-8-P1a  Mun-Mir-8-P1a  Npo-Mir-8  Oan-Mir-8-P1a  Obi-Mir-8  Ocu-Mir-8-P1a  Ovu-Mir-8  Pbv-Mir-8-P1a  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P1a  Sha-Mir-8-P1a  Sko-Mir-8  Spt-Mir-8-P1a  Spu-Mir-8  Sto-Mir-8-P1a  Tca-Mir-8  Tgu-Mir-8-P1a  Tni-Mir-8-P1a  Xla-Mir-8-P1a1  Xla-Mir-8-P1a2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr7: 78802291-78802350 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1a)
Mir-8-P3a chr7: 78797789-78797847 [-] UCSC Ensembl
Mir-8-P2a chr7: 78800615-78800675 [-] UCSC Ensembl
Mir-8-P1a chr7: 78802291-78802350 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACCCCUUUGGAUUCUGUGGCGCUAUUGCCAUCUUACUGGGCAGCAUUGGAUUUUGUCUAUGUUUCUAAUACUGCCUGGUAAUGAUGAUUAUGGCGCCCCACAUACAACGUGCGGCAAG
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Structure
        10          20        30         40        50         
AUACCCCUUUGGAUUCU-- U        UGC    -|   UG     C      UUUUGU 
                   G GGCGCUAU   CAUC UUAC  GGCAG AUUGGA      \
                   C CCGCGGUA   GUAG AAUG  CCGUC UAAUCU      C
GAACGGCGUGCAACAUACA C        UUA    U^   GU     A      UUGUAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-8-P1a_5p*

mirBase accessionNone
Sequence
0- CAUCUUACUGGGCAGCAUUGGA -22
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Mature sequence

Xtr-Mir-8-P1a_3p

mirBase accessionMIMAT0003694
Sequence
37- UAAUACUGCCUGGUAAUGAUGAU -60
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Proposed targets TargetScanVert: xtr-miR-200b