MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-489-v1

Family name MIR-489 (all species)
Seed UGACAUC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-489
Paralogues Xtr-Mir-489-v2 
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(xenTro9_add)		 chr6: 24122623-24122682 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v1)		 Mir-489-v2 chr6: 24122622-24122683 [-] UCSC Ensembl
Mir-489-v1 chr6: 24122623-24122682 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGCUGAGACCAUAAUGGUGGUGGCUUAGUGGUCGUAUGUAUGACGUCAUUUACUGGAUUUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGACACGUCUGUCUUGGA
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Structure
        10          20        30        40        50         
UCGCUGAGACCAUAAUG--|UG UG C    UG             C       ACUGGA 
                   G  G  G UUAG  GUCGUAUGUAUGA GUCAUUU      U
                   C  C  C AAUC  CGGCAUGUAUACU CAGUGAG      U
AGGUUCUGUCUGCACAGUA^GU GU A    GU             A       GAUUUU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-489-v1_5p*
mirBase accessionNone
Sequence 
0- GGUCGUAUGUAUGACGUCAUUU -22
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Mature sequence

Xtr-Mir-489-v1_3p
mirBase accessionMIMAT0003642
Sequence 
38- GUGACAUCAUAUGUACGGCUGC -60
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Proposed targets TargetScanVert: xtr-miR-489