MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-34-P3a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-449c
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3b  Xtr-Mir-34-P3c  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Loc-Mir-34-P3a  Mmu-Mir-34-P3a  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ovu-Mir-34  Pbv-Mir-34-P3a  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3a  Sko-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Xbo-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr1: 178899500-178899564 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)
Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAACAUGUAAUAAAAGUUUGGACCAAUGAGGCAGUGCACUUGCUAGCUGGCUGUUGUGUUCUGGAAGCUUACAGCUGCUAGCUGCACUCCACAUUGUUUCAUUCUGAGCAGCGUUUGGAUGUG
Get precursor sequence
Structure
        10          20        30        40        50        60    
UAAAACAUGUAAUAAAA--|UU    C     A  C      CUU      U      UGUGUUC 
                   G  UGGA CAAUG GG AGUGCA   GCUAGC GGCUGU       U
                   C  ACUU GUUAC CC UCACGU   CGAUCG UCGACA       G
GUGUAGGUUUGCGACGAGU^UU    U     A  -      ---      -      UUCGAAG 
   120       110       100         90           80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-34-P3a_5p

mirBase accessionMIMAT0022747
Sequence
0- AGGCAGUGCACUUGCUAGCUGGCUGU -26
Get sequence
Proposed targets TargetScanVert: xtr-miR-449c-5p
Star sequence

Xtr-Mir-34-P3a_3p*

mirBase accessionMIMAT0022748
Sequence
43- CAGCUGCUAGCUGCACUCCACA -65
Get sequence
Proposed targets TargetScanVert: xtr-miR-449c-3p