MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-34-P2a1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-34b-2
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3a  Xtr-Mir-34-P3b  Xtr-Mir-34-P3c  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Hsa-Mir-34-P2a  Isc-Mir-34  Lch-Mir-34-P2a  Lgi-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mml-Mir-34-P2a  Mmu-Mir-34-P2a  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ovu-Mir-34  Pbv-Mir-34-P2a  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2a  Sha-Mir-34-P2a  Sko-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Xbo-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b 
Node of Origin (locus) Xenopus
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr7: 75059640-75059700 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2a1)		 Mir-34-P2a1 chr7: 75059640-75059700 [-] UCSC Ensembl
Mir-34-P2a2 chr7: 75066361-75066422 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUGUCUGUCUGAACUAUGUUCGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAUAUCAAAUUUGCAAUCACUAGCUAAACUACCAUAAAAACUUAACAUAAAAGUGCUGCAUUGAUA
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Structure
        10         20        30         40        50        60
GCAUGUCUGUCUGAACU-     C      CA-| C   G       C       GUUAUA 
                  AUGUU GGUUUU   GG AGU UAGUUAG UGAUUGU      U
                  UACAA UCAAAA   CC UCA AUCGAUC ACUAACG      C
AUAGUUACGUCGUGAAAA     U      AUA^ A   A       -       UUUAAA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-34-P2a1_5p
mirBase accessionMIMAT0003579
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Proposed targets TargetScanVert: xtr-miR-34b
Star sequence

Xtr-Mir-34-P2a1_3p*
mirBase accessionNone
Sequence 
39- AAUCACUAGCUAAACUACCAUA -61
Get sequence