MirGeneDB

MirGeneDB ID

Xtr-Mir-193-P1b

Family name MIR-193 (all species)
Seed ACUGGCC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-193
Paralogues Xtr-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cli-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1b  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Hme-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lgi-Mir-193-P1  Mdo-Mir-193-P1b  Mml-Mir-193-P1b  Mmu-Mir-193-P1b  Oan-Mir-193-P1b  Ocu-Mir-193-P1b  Pmi-Mir-193-P1  Rno-Mir-193-P1b  Sha-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro7)
KB021661: 64005309-64005367 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACCAACGCGUGACUAGUGUGGUUUCGGAGUCGGGAUUUUGGGGGCGAGAUGAGCUAAUGAUUUAUCCAACUGGCCCGCAAAGUCCCGCUUCUGGAAGUCACUUUGUUCUGCAAGUAAAA
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Structure
        10         20         30        40        50         
ACCAACGCGUGACUAGU-    -|       U          G    G  A  AGCUAAU 
                  GUGG UUUCGGAG CGGGAUUUUG GGGC AG UG       \
                  CACU AAGGUCUU GCCCUGAAAC CCCG UC AC       G
AAAAUGAACGUCUUGUUU    G^       C          G    G  A  CUAUUUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-193-P1b_5p*

MirBase accessionNone
Sequence
0- CGGGAUUUUGGGGGCGAGAUGA -22
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Mature sequence

Xtr-Mir-193-P1b_3p

MirBase accessionMIMAT0003616
Sequence
37- AACUGGCCCGCAAAGUCCCGCU -59
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Validated targets TargetScanVert: xtr-miR-193