MirGeneDB ID | Xtr-Mir-153-P2 |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-153-1
|
Paralogues |
Xtr-Mir-153-P1
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P2
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Dre-Mir-153-P2a
Dre-Mir-153-P2b
Gga-Mir-153-P2
Gja-Mir-153-P2
Gmo-Mir-153-P2a
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2a
Mal-Mir-153-P2b
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pma-Mir-153-o2
Pmi-Mir-153
Sha-Mir-153-P2
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Tni-Mir-153-P2a
Tni-Mir-153-P2b
Xbo-Mir-153
Xla-Mir-153-P2c
Xla-Mir-153-P2d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (xenTro9_add) |
chr9: 78533754-78533813 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGAUCCCACGGAGAUCACGGCUGCCCUUGUCAUUUUUGUGAUUUGCAGCUUGUAAUUUUGGUCUCAGUUGCAUAGUCACAAAAGUGAUCAUGGGCAGGUGGGGCAGCGCCGCGUUGGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGAUCCCACGGAGAUCA- G U - -| UGUAAUU
CG CUGCCC UG UCAUUUUUGUGAUU UGCAGCU \
GU GACGGG AC AGUGAAAACACUGA ACGUUGA U
UCGGUUGCGCCGCGACGGG G U U U^ CUCUGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Xtr-Mir-153-P2_5p* |
mirBase accession | None |
Sequence |
0- UCAUUUUUGUGAUUUGCAGCU -21
Get sequence
|
Mature sequence |
Xtr-Mir-153-P2_3p |
mirBase accession | MIMAT0003607 |
Sequence |
38- UUGCAUAGUCACAAAAGUGAUC -60
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-153
|