MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-148a
Paralogues Xtr-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr6: 33524418-33524477 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGCACUUUGCUUACUAGUCUUUUAAAUCAAAGUUCUGUGACACUUAGACUCUGAAUAUGAUAGCAGUCAGUGCACUACAGAACUUUGUUUUGGGAGUCUGCAGCUUCUCCUGUGAGUG
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Structure
        10          20        30        40          50         
CCAGCACUUUGCUUACU--  U        U            A--|   UA    CUGAAU 
                   AG CUUUUAAA CAAAGUUCUGUG   CACU  GACU      A
                   UC GAGGGUUU GUUUCAAGACAU   GUGA  CUGA      U
GUGAGUGUCCUCUUCGACG  U        U            CAC^   --    CGAUAG 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-148-P1_5p*
mirBase accessionNone
Sequence 
0- AAAGUUCUGUGACACUUAGACU -22
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Mature sequence

Xtr-Mir-148-P1_3p
mirBase accessionMIMAT0003664
Sequence 
38- UCAGUGCACUACAGAACUUUGU -60
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Proposed targets TargetScanVert: xtr-miR-148a