Mir-145

MirGeneDB ID

Xtr-Mir-145

Family name

MIR-145 (all species)

Seed

UCCAGUU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-145

Paralogues

Orthologues

Aca-Mir-145 Ami-Mir-145 Bta-Mir-145 Cfa-Mir-145 Cli-Mir-145 Cmi-Mir-145 Cpi-Mir-145 Cpo-Mir-145 Dno-Mir-145 Dre-Mir-145 Ebu-Mir-145 Ete-Mir-145 Gga-Mir-145 Gja-Mir-145 Gmo-Mir-145 Hsa-Mir-145 Lch-Mir-145 Loc-Mir-145 Mal-Mir-145 Mdo-Mir-145 Mml-Mir-145 Mmu-Mir-145 Mun-Mir-145 Oan-Mir-145 Ocu-Mir-145 Pbv-Mir-145 Pma-Mir-145 Rno-Mir-145 Sha-Mir-145 Spt-Mir-145 Sto-Mir-145 Tgu-Mir-145 Xla-Mir-145-P1 Xla-Mir-145-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr3: 31807233-31807292 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-145)

Mir-143 chr3: 31806273-31806327 [+] UCSC Ensembl
Mir-145 chr3: 31807233-31807292 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCACAGUCAUAUGUGACCUAUUCCUCAAGGUCCAGUUUUCCCAGGAAUCCCUUGGGUGCUGUGGUGGGGAUUCCUGGAAAUACUGUUCUUGGGGUGUAGGCGUGGCAACUGGAACUCUC

Get precursor sequence

Structure

        10          20        30        40        50          
CUCACAGUCAUAUGUGA--|    U        UC    U  C            UGGGUG 
                   CCUAU CCUCAAGG  CAGU UU CCAGGAAUCCCU      \
                   GGAUG GGGGUUCU  GUCA AA GGUCCUUAGGGG      C
CUCUCAAGGUCAACGGUGC^    U        U-    U  A            UGGUGU 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts -1 and -2 on both arms.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-145_5p

mirBase accession

MIMAT0003688

Sequence

0- GUCCAGUUUUCCCAGGAAUCCCU -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-145

Star sequence

Xtr-Mir-145_3p* (predicted)

mirBase accession

None

Sequence

38- GGAUUCCUGGAAAUACUGUUCU -60

Get sequence