MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-143
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmu-Mir-143  Mun-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr3: 31806273-31806327 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-143 chr3: 31806273-31806327 [+] UCSC Ensembl
Mir-145 chr3: 31807233-31807292 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGCAGACACCCACUGUCUCCCAGCCCAAGGUGCAGUGCUGCAUCUCUGGUCAGUUGUGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGGGAAUAACACAGCAACUCAGAA
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Structure
        10          20        30        40        50       
ACGGCAGACACCCACUG--|     AG   A  G         G      UGGUCAGU 
                   UCUCCC  CCC AG UGCAGUGCU CAUCUC        \
                   AGGGGG  GGG UC AUGUCACGA GUAGAG        U
AAGACUCAACGACACAAUA^     AA   C  G         A      UCUGAGUG 
   110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-143_5p*
mirBase accessionNone
Sequence 
0- GGUGCAGUGCUGCAUCUCUGGUC -23
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Mature sequence

Xtr-Mir-143_3p
mirBase accessionMIMAT0003686
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
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Proposed targets TargetScanVert: xtr-miR-143