MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-125a
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)
chr7: 112726416-112726474 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)
Mir-10-P2b chr7: 112711722-112711779 [+] UCSC Ensembl
Let-7-P1b chr7: 112714578-112714644 [+] UCSC Ensembl
Mir-10-P3b chr7: 112726416-112726474 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAGGUCCAAUUAAUGGUGUGAUGUUCUGUCCCUGAGACCCUUAACCUGUGAGGAAGACAUAUGUCACAGGUGAGGUUCUGAGGAGCUGGACGCCAUGCACAGACCGCACAAACAACA
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Structure
        10          20        30        40        50         
GUGAGGUCCAAUUAAUG--|    A     U UC   G   C     A       GGAAG 
                   GUGUG UGUUC G  CCU AGA CCUUA CCUGUGA     A
                   CGUAC GCAGG C  GGA UCU GGAGU GGACACU     C
ACAACAAACACGCCAGACA^    C     U GA   G   U     -       GUAUA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-10-P3b_5p

mirBase accessionMIMAT0003684
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
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Proposed targets TargetScanVert: xtr-miR-125a
Star sequence

Xtr-Mir-10-P3b_3p*

mirBase accessionNone
Sequence
37- ACAGGUGAGGUUCUGAGGAGCU -59
Get sequence