MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-92-1
Paralogues Tgu-Mir-92-P1c  Tgu-Mir-92-P1d  Tgu-Mir-92-P2a  Tgu-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)
1: 71704225-71704283 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-17-P1a 1: 71703517-71703577 [+] UCSC Ensembl
Mir-17-P2a 1: 71703664-71703728 [+] UCSC Ensembl
Mir-19-P1a 1: 71703804-71703861 [+] UCSC Ensembl
Mir-17-P4a 1: 71703973-71704031 [+] UCSC Ensembl
Mir-19-P2a 1: 71704107-71704167 [+] UCSC Ensembl
Mir-92-P1a 1: 71704225-71704283 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGGAAAAAAUUAUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGAUAGAGGCUGAAACAC
Get precursor sequence
Structure
        10          20        30        40        50         
GUGUGGAAAAAAUUAUA-  -| UU   AC            C   U        GUGUG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG     G
CACAAAGUCGGAGAUAGG  U^ UU   GU            U   -        UGUCU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-92-P1a_5p*

mirBase accessionMIMAT0027007
Sequence
0- AGGUUGGGAUCAGUUGCAAUGCU -23
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Mature sequence

Tgu-Mir-92-P1a_3p

mirBase accessionMIMAT0014574
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
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