MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-430-P1  Tgu-Mir-430-P2  Tgu-Mir-430-P4 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cli-Mir-430-P3  Cmi-Mir-430-P3  Cpi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
4: 66548557-66548616 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUCGUUUUUCCCCUGAAGGACCCCCACAACUUAAAUGUGGACGUGCUUGCUUUGGCUCACAACAGUAAGUGCUUCCAUGUUUUAGUGGUGGUGAAUCCUUUUAACCUCAACACUUUCC
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Structure
        10         20         30        40        50         
AUGUCGUUUUUCCCCUG-     CCC-|   A   U         C UG      UUGGC 
                  AAGGA    CCAC ACU AAAUGUGGA G  CUUGCU     U
                  UUCCU    GGUG UGA UUUGUACCU C  GAAUGA     C
CCUUUCACAACUCCAAUU     AAGU^   G   U         U GU      CAACA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-430-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUAAAUGUGGACGUGCUUGCU -23
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Mature sequence

Tgu-Mir-430-P3_3p

mirBase accessionNone
Sequence
37- UAAGUGCUUCCAUGUUUUAGUGG -60
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