MirGeneDB 2.1
MirGeneDB ID

Tgu-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-30c
Paralogues Tgu-Mir-30-P1a  Tgu-Mir-30-P1b  Tgu-Mir-30-P1d  Tgu-Mir-30-P2a  Tgu-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 3: 29904543-29904604 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)		 Mir-30-P2b 3: 29904543-29904604 [-] UCSC Ensembl
Mir-30-P1b 3: 29930926-29930989 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUUCUUGGGAGCUCUGAGUGACAGGUAUUGUAAACAUCCUACACUCUCAGCUGUGGAAACUAAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCGUCUGGAGGACAAG
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Structure
        10        20         30            40        50        60 
GUGUUCUUGGGAGCUCUGAGUGA -     UU----|      U   ACA         GUGGAA 
                       C AGGUA      GUAAACA CCU   CUCUCAGCU      A
                       G UCCGU      CAUUUGU GGA   GAGGGUCGA      C
GAACAGGAGGUCUGCUAAAG--- U     CUCUCU^      C   A--         AAGAAU 
120       110          100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-30-P2b_5p
mirBase accessionMIMAT0014521
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Tgu-Mir-30-P2b_3p*
mirBase accessionMIMAT0014686
Sequence 
40- CUGGGAGAAGGCUGUUUACUCU -62
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