| MirGeneDB ID | Tgu-Mir-2997 |
|---|
| Family name |
MIR-2997 (all species) |
|---|
| Seed |
AGGAGCU |
|---|
| Species |
Zebra finch (Taeniopygia guttata) |
|---|
| MiRBase ID |
tgu-mir-2997
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
T. guttata
|
|---|
| Node of Origin (family) |
T. guttata
|
|---|
Genome context
(TaeGut1_add) |
20: 6160929-6160990 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGGCACAGGGGUCCAGGGCUCAGGAAGCACCAAACAUGUCCAAGUUCCUCACAGUGCUGGCAGUAGUCUGCAGGAGCUUGGACAUGUUAGGUGCAUUCUCAGCCCACCCAGCCUCCUGGCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGGCACAGGGGUCCAGG--| C A A CA UGCUGG
GCU AGGA GCACC AACAUGUCCAAGUUCCU CAG \
CGA UCUU CGUGG UUGUACAGGUUCGAGGA GUC C
UCCGGUCCUCCGACCCACC^ C A A C- UGAUGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Tgu-Mir-2997_5p* |
| mirBase accession | MIMAT0014653 |
|---|
| Sequence |
0- CAAACAUGUCCAAGUUCCUCACAG -24
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-2997_3p |
| mirBase accession | MIMAT0014604 |
|---|
| Sequence |
40- CAGGAGCUUGGACAUGUUAGGU -62
Get sequence
|
|---|
