MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-2962

Family name MIR-2962 (all species)
Seed CAUCCCC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-2962
Paralogues
Orthologues
Node of Origin (locus) T. guttata
Node of Origin (family) T. guttata
Genome context
(TaeGut1_add)
17: 6697965-6698023 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGGGGCCUCGUCCAGCCCUGGGAAGGGGAGGAGCGAGGAAGGGGAUGGGAUGGGCUAACCAGGGUCCAUCCCCUGCCUCUCUUCUCCCUUUCCUGGGGCAGCUCCUGCAGCAAAACA
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Structure
        10          20        30        40        50         
UGUGGGGCCUCGUCCAG--|  UG             C    A          AUGGGCU 
                   CCC  GGAAGGGGAGGAG GAGG AGGGGAUGGG       \
                   GGG  CCUUUCCCUCUUC CUCC UCCCCUACCU       A
ACAAAACGACGUCCUCGAC^  GU             U    G          GGGACCA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-2962_5p*

mirBase accessionMIMAT0014462
Sequence
0- AGGAGCGAGGAAGGGGAUGGGA -22
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Mature sequence

Tgu-Mir-2962_3p

mirBase accessionMIMAT0014621
Sequence
37- CCAUCCCCUGCCUCUCUUCUCC -59
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