MirGeneDB

Gene name

Tgu-Mir-29-P1b

Family name MIR-29 (all species)
MiRBase ID tgu-mir-29a-2
Paralogues Tgu-Mir-29-P1a  Tgu-Mir-29-P2a  Tgu-Mir-29-P2b-v1  Tgu-Mir-29-P2b-v2 
Orthologues Aca-Mir-29-P1b  Ami-Mir-29-P1b  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bta-Mir-29-P1b  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b3  Cfa-Mir-29-P1b4  Cgi-Mir-29-P1  Cin-Mir-29-P1  Cli-Mir-29-P1b  Cpi-Mir-29-P1b  Cpo-Mir-29-P1b  Cte-Mir-29-P1  Dno-Mir-29-P1b  Ete-Mir-29-P1b  Gga-Mir-29-P1b  Hsa-Mir-29-P1b  Isc-Mir-29-P1  Lgi-Mir-29-P1  Mdo-Mir-29-P1b  Mml-Mir-29-P1b  Mmu-Mir-29-P1b  Ocu-Mir-29-P1b  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1b1  Rno-Mir-29-P1b2  Sha-Mir-29-P1b  Sko-Mir-29-P1  Spu-Mir-29-P1  Xtr-Mir-29-P1b 
Node of Origin (gene) Vertebrata
Node of Origin (family) Bilateria
Genome context
(taeGut3.2.4)
26: 3761361-3761420 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-29-P1b)
Mir-29-P2b-v1 26: 3760396-3760458 [+] UCSC Ensembl
Mir-29-P2b-v2 26: 3760397-3760457 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCCAGGAAAACGUCUCUUACACAGGCUGACCGAUUUCUCUUGGUGUUCAGAGUCUCAGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAACAGCAAUGGG
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Structure
        10            20         30        40        50          
GAGCCAGGAAAACGUCU----      -| GGC           UCU       C   GUCUCA 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU      G
GGGUAACGACAACGAAAAGGG      A^ ---           UUU       -   GUUUUU 
.       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-29-P1b_5p*

MirBase accessionMIMAT0031063
Sequence
0- ACCGAUUUCUCUUGGUGUUCAGA -23
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Mature sequence

Tgu-Mir-29-P1b_3p

MirBase accessionMIMAT0014532
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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Seed sequenceAGCACCA