MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-214-v2

Family name MIR-214 (all species)
Seed ACAGCAG
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-214
Paralogues Tgu-Mir-214-v1 
Orthologues Aca-Mir-214-v2  Ami-Mir-214-v2  Bta-Mir-214-v2  Cfa-Mir-214-v2  Cli-Mir-214-v2  Cmi-Mir-214-v2  Cpi-Mir-214-v2  Cpo-Mir-214-v2  Dno-Mir-214-v2  Ete-Mir-214-v2  Gga-Mir-214-v2  Gja-Mir-214-v2  Hsa-Mir-214-v2  Lch-Mir-214  Loc-Mir-214-v2  Mdo-Mir-214-v2  Mml-Mir-214-v2  Mmu-Mir-214-v2  Mun-Mir-214  Oan-Mir-214-v2  Ocu-Mir-214-v2  Pbv-Mir-214-v2  Rno-Mir-214-v2  Sha-Mir-214-v2  Spt-Mir-214  Sto-Mir-214-v2  Xtr-Mir-214-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(TaeGut1_add)
8: 31108394-31108456 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-v2)
Mir-214-v1 8: 31108394-31108456 [-] UCSC Ensembl
Mir-214-v2 8: 31108394-31108456 [-] UCSC Ensembl
Mir-199-P1-v1 8: 31114364-31114424 [-] UCSC Ensembl
Mir-199-P1-v2 8: 31114364-31114424 [-] UCSC Ensembl
Mir-199-P1-v3 8: 31114364-31114424 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGACUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCGCAUGACAACCCAGCCUGAGGGACAGCCG
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Structure
        10          20        30        40        50        60 
GGGACUGGCUGGACGGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACGC GACGGACAGA   GGACGACAUGU       C
GCCGACAGGGAGUCCGACC^          U          CAC           CCACUCU 
 120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-214-v2_5p*

mirBase accessionMIMAT0027021
Sequence
0- UGCCUGUCUACACUUGCUGUGCA -23
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Mature sequence

Tgu-Mir-214-v2_3p

mirBase accessionMIMAT0014603
Sequence
40- UACAGCAGGCACAGACAGGCAGU -63
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