MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-203-v2

Family name MIR-203 (all species)
Seed GAAAUGU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-203
Paralogues Tgu-Mir-203-v1 
Orthologues Aca-Mir-203-v2  Ami-Mir-203-v2  Bta-Mir-203-v2  Cfa-Mir-203-v2  Cpi-Mir-203-v2  Cpo-Mir-203-v2  Dno-Mir-203-v2  Ete-Mir-203-v2  Gga-Mir-203-v2  Gja-Mir-203-v2  Hsa-Mir-203-v2  Lch-Mir-203  Loc-Mir-203-v2  Mdo-Mir-203-v2  Mml-Mir-203-v2  Mmu-Mir-203-v2  Mun-Mir-203-v2  Oan-Mir-203-v2  Ocu-Mir-203-v2  Pbv-Mir-203-v2  Rno-Mir-203-v2  Sha-Mir-203-v2  Spt-Mir-203  Sto-Mir-203-v2  Xtr-Mir-203-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
5: 52283965-52284024 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v2)
Mir-203-v1 5: 52283965-52284024 [+] UCSC Ensembl
Mir-203-v2 5: 52283965-52284024 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCCCGCGGACCCUCAGCCUCCUUGGUGCAGUGGUUCUUAACAGUUCAACAGUUCUCUAGCAUAAUUGUGAAAUGUUUAGGACCACUUGACCAGCGAGGCCCGGGCAUCGGCCGGCAGC
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Structure
        10          20        30        40        50          
CUCCCCGCGGACCCUCA--|    C     GC         U    G    A  GUUCUCU 
                   GCCUC UUGGU  AGUGGUUCU AACA UUCA CA       \
                   CGGAG GACCA  UCACCAGGA UUGU AAGU GU       A
CGACGGCCGGCUACGGGCC^    C     GU         U    A    -  UAAUACG 
.       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-203-v2_5p*

mirBase accessionMIMAT0027022
Sequence
0- AGUGGUUCUUAACAGUUCAACA -22
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Mature sequence

Tgu-Mir-203-v2_3p

mirBase accessionMIMAT0014605
Sequence
39- UGAAAUGUUUAGGACCACUUG -60
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