MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-181-P1b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-181a-2
Paralogues Tgu-Mir-181-P1a  Tgu-Mir-181-P2a  Tgu-Mir-181-P2b 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cli-Mir-181-P1b  Cmi-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Dre-Mir-181-P1b2  Ete-Mir-181-P1b  Gga-Mir-181-P1b  Gja-Mir-181-P1b  Gmo-Mir-181-P1b2  Hsa-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mal-Mir-181-P1b2  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tni-Mir-181-P1b1  Xla-Mir-181-P1b3  Xla-Mir-181-P1b4  Xtr-Mir-181-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
17: 10778915-10778975 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1b)
Mir-181-P1b 17: 10778915-10778975 [+] UCSC Ensembl
Mir-181-P2b 17: 10779964-10780023 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUACAGCCAUCUUUGGAUAGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGAACUAGAAAAAACCAUCGACCGUUGACUGUACCUUGAGGUUUAUCACAAACCCUCUGUUAAAU
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Structure
        10         20         30        40        50        60 
GUGUACAGCCAUCUUUG-   -|       UGA   U      CU       A  UUGAGAA 
                  GAU AGCUUCAG   ACA UCAACG  GUCGGUG GU       C
                  CUA UUGGAGUU   UGU AGUUGC  CAGCUAC CA       U
UAAAUUGUCUCCCAAACA   U^       CCA   C      --       -  AAAAAGA 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-181-P1b_5p

mirBase accessionMIMAT0014546
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Tgu-Mir-181-P1b_3p*

mirBase accessionMIMAT0031043
Sequence
39- ACCAUCGACCGUUGACUGUACC -61
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