MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1552

Family name MIR-1552 (all species)
Seed GCUAGCU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues
Orthologues Cli-Mir-1552  Gga-Mir-1552 
Node of Origin (locus) Neognathae
Node of Origin (family) Neognathae
Genome context
(TaeGut1_add)
Tgu-Mir-1552_pre_1:30042988-30043131: 44-101 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNNNGCUCGGCUACAUGGGGAAGUUACUGCGCAGCAAACUAGGGUGUGAAUUUACAGCACGCUAGCUGCUCUGCACUAACUCCCCCUGUGGAUGCUGAGUGUGCACUAAGA
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Structure
        10           20        30        40        50         
NNNNNNNNNNNGCUCGG---|    U     A    C    C    AA    G   UGAAU 
                    CUACA GGGGA GUUA UGCG AGCA  CUAG GUG     \
                    GGUGU CCCCU CAAU ACGU UCGU  GAUC CAC     U
AGAAUCACGUGUGAGUCGUA^    C     -    C    C    C-    G   GACAU 
      110       100        90         80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-1552_5p* (predicted)

mirBase accessionNone
Sequence
0- UUACUGCGCAGCAAACUAGGGUG -23
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Mature sequence

Tgu-Mir-1552_3p

mirBase accessionNone
Sequence
36- CGCUAGCUGCUCUGCACUAACU -58
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