MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-147
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmu-Mir-147-v1  Mmu-Mir-147-v2  Oan-Mir-147  Ocu-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Spt-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
10: 11177114-11177173 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGCCUGAAAAAGGUACCCUAUGAAUCUAGUGGAAUCAUUUCUGCACAAACUUGACUACUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUACAUUUUUUUUA
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Structure
        10          20        30        40        50         
GUUGCCUGAAAAAGGUA--|    U    C   UG   U            AACUUGACU 
                   CCCUA GAAU UAG  GAA CAUUUCUGCACA         A
                   GGGAU UUUA AUC  CUU GUAAAGGCGUGU         C
AUUUUUUUUACAUCCCUCU^    U    C   GU   C            GACUAAAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-147_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGGAAUCAUUUCUGCACAAACU -23
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Mature sequence

Tgu-Mir-147_3p

mirBase accessionMIMAT0014606
Sequence
38- GUGUGCGGAAAUGCUUCUGCUA -60
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