Mir-146-P1

MirGeneDB ID

Tgu-Mir-146-P1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-146b

Paralogues

Tgu-Mir-146-P2 Tgu-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

6: 22361514-22361573 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAAGCUGACUUGCACUGGCUGCUUGGCUCUGAGAACUGAAUUCCAUAGGCGUUGAAGCCUCCAAAAUGCCCUAUGGAUUCAGUUCUGCAGCUGGGCAGCAACUGAGCCUCAAACCUUCA

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Structure

        10          20        30        40        50           
GGAAGCUGACUUGCACUG--|     UG   CUG          U       -    GAAGC 
                    GCUGCU  GCU   AGAACUGAAU CCAUAGG CGUU     \
                    CGACGG  CGA   UCUUGACUUA GGUAUCC GUAA     C
ACUUCCAAACUCCGAGUCAA^     GU   CG-          -       C    AACCU 
.       110       100        90         80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-146-P1_5p

mirBase accession

MIMAT0014602

Sequence

0- UGAGAACUGAAUUCCAUAGGCGUU -24

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Star sequence

Tgu-Mir-146-P1_3p*

mirBase accession

MIMAT0014652

Sequence

37- UGCCCUAUGGAUUCAGUUCUGCA -60

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