MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-122
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmu-Mir-122  Mun-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
Z: 1940926-1940982 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUAAGGACCUUCCUGCUCCCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCCAUCUAUCAAACGCCAUUAUCACACUAAAUAGUUCCUGGCAGACAAGGCAUCGGGUCAGGA
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Structure
        10         20         30        40        50        
AGGCUAAGGACCUUCCUG-  C   -|      GG       C           UGUCC 
                   CU CCA GAGCUGU  AGUGUGA AAUGGUGUUUG     \
                   GA GGU CUUGAUA  UCACACU UUACCGCAAAC     A
AGGACUGGGCUACGGAACA  C   C^      AA       A           UAUCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-122_5p

mirBase accessionMIMAT0014529
Sequence
0- UGGAGUGUGACAAUGGUGUUUG -22
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Star sequence

Tgu-Mir-122_3p*

mirBase accessionMIMAT0026987
Sequence
35- AACGCCAUUAUCACACUAAAUA -57
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