MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-3851-P4c

Family name MIR-3851 (all species)
Seed AGUACGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3851k-3
Paralogues Tca-Mir-3851-P1  Tca-Mir-3851-P2  Tca-Mir-3851-P3  Tca-Mir-3851-P4a  Tca-Mir-3851-P4b  Tca-Mir-3851-P4d  Tca-Mir-3851-P5a  Tca-Mir-3851-P5b  Tca-Mir-3851-P6  Tca-Mir-3851-P7  Tca-Mir-3851-P8a  Tca-Mir-3851-P8b  Tca-Mir-3851-P9a  Tca-Mir-3851-P9b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
KQ972170: 26268-26327 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3851-P4c)
Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAGUGAAAUUUGAAUAAAUUUAGUGCUGGGUUGGCAAAAGGUGGUACCAUGUAACAUUUUAACCCAUAGUACGACCCAUGCCGGCUCAGUAAUAAAUUACAAUUCGCCAGCAAGUGAA
Get precursor sequence
Structure
        10          20        30        40        50          
UUAAGUGAAAUUUGAAUA--|     G             AAA   G    C   UAACAU 
                    AAUUUA UGCUGGGUUGGCA   GGU GUAC AUG      \
                    UUAAAU AUGACUCGGCCGU   CCA CAUG UAC      U
AAGUGAACGACCGCUUAACA^     A             AC-   G    A   CCAAUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3851-P4c_5p*

mirBase accessionMIMAT0045493
Sequence
0- GGUUGGCAAAAGGUGGUACCAUG -23
Get sequence
Mature sequence

Tca-Mir-3851-P4c_3p

mirBase accessionMIMAT0045494
Sequence
38- UAGUACGACCCAUGCCGGCUCA -60
Get sequence