MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-3851-P3

Family name MIR-3851 (all species)
Seed AGUACGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3851j
Paralogues Tca-Mir-3851-P1  Tca-Mir-3851-P2  Tca-Mir-3851-P4a  Tca-Mir-3851-P4b  Tca-Mir-3851-P4c  Tca-Mir-3851-P4d  Tca-Mir-3851-P5a  Tca-Mir-3851-P5b  Tca-Mir-3851-P6  Tca-Mir-3851-P7  Tca-Mir-3851-P8a  Tca-Mir-3851-P8b  Tca-Mir-3851-P9a  Tca-Mir-3851-P9b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG6: 273025-273083 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-3851-P3)
Mir-3851-P2 LG6: 272921-272978 [-] Ensembl
Mir-3851-P3 LG6: 273025-273083 [-] Ensembl
Mir-11626 LG6: 273389-273446 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUACCGGAUAAAUAAUAAAUAUGGUGAUGAGUUGAUUUGGGGUGGUACUAUGUUUGAAGAUACGCAUAGUACGUUCCGAAUCAACUUGUUAACAAAUUUAAAUUCGAUAAUUAAAUUC
Get precursor sequence
Structure
        10          20        30        40        50         
GCUACCGGAUAAAUAAU--|   A  G   UG           GG  G       UUUGA 
                   AAAU UG UGA  AGUUGAUUUGG  UG UACUAUG     A
                   UUUA AC AUU  UCAACUAAGCC  GC AUGAUAC     G
CUUAAAUUAAUAGCUUAAA^   A  A   GU           UU  -       GCAUA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3851-P3_5p*

mirBase accessionMIMAT0045536
Sequence
0- AGUUGAUUUGGGGUGGUACUAUG -23
Get sequence
Mature sequence

Tca-Mir-3851-P3_3p

mirBase accessionMIMAT0045537
Sequence
37- UAGUACGUUCCGAAUCAACUUG -59
Get sequence