MirGeneDB

Gene name

Tca-Mir-3820

Family name MIR-3820 (all species)
MiRBase ID tca-mir-3820
Paralogues
Orthologues
Node of Origin (gene) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LGX: 6587625-6587682 [+] Ensembl
Clustered MiRNAs
(< 10kb from Mir-3820)
Mir-3809 LGX: 6585862-6585919 [+] Ensembl
Mir-3825 LGX: 6586009-6586065 [+] Ensembl
Mir-3821-v2 LGX: 6586315-6586372 [+] Ensembl
Mir-3821-v1 LGX: 6586315-6586372 [+] Ensembl
Mir-11635 LGX: 6586742-6586801 [+] Ensembl
Mir-3814 LGX: 6587955-6588013 [+] Ensembl
Mir-11636 LGX: 6593233-6593288 [+] Ensembl
Mir-3822 LGX: 6594368-6594426 [+] Ensembl
Mir-3816-v1 LGX: 6594971-6595029 [+] Ensembl
Mir-3816-v2 LGX: 6594971-6595029 [+] Ensembl
Mir-3811-P6 LGX: 6595867-6595926 [+] Ensembl
Mir-3811-P1 LGX: 6596442-6596505 [+] Ensembl
Mir-3811-P2a LGX: 6597098-6597161 [+] Ensembl
Mir-3811-P2b LGX: 6597433-6597496 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACAUCGGACAAAAAAAUUGUGUGCAAUUUCUUGCCAAGCCGUUACAGCAUUUUAUAUUUAAGAAAUCCUGUACAGGUUUUGCAAUAAAAUUGUGCACGAACAUUCAUCACUUGCACC
Get precursor sequence
Structure
        10         20        30         40        50        
AACAUCGGACAAAAAAA-     UG      C-|   C     GU     C   UUAUA 
                  UUGUG  CAAUUU  UUGC AAGCC  UACAG AUU     U
                  AGCAC  GUUAAA  AACG UUUGG  AUGUC UAA     U
CCACGUUCACUACUUACA     GU      AU^   U     AC     C   AGAAU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Oo
Mature sequence

Tca-Mir-3820_5p

MirBase accessionMIMAT0018666
Sequence
0- CUUGCCAAGCCGUUACAGCAUU -22
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Seed sequenceUUGCCAA
Star sequence

Tca-Mir-3820_3p*

MirBase accessionMIMAT0018667
Sequence
36- UCCUGUACAGGUUUUGCAAUAA -58
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