MirGeneDB ID | Tca-Mir-279-o22 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Red flour beetle (Tribolium castaneum) |
MiRBase ID |
tca-mir-279b
|
Paralogues |
Tca-Mir-279-o21
Tca-Mir-279-o23
Tca-Mir-279-o24
Tca-Mir-279-o25
|
Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
T. castaneum
|
Node of Origin (family) |
Protostomia
|
Genome context (Tcas5.2) |
LG5: 444013-444072 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGACAAAGCGGUAGUUAUCCUAAAGUUUUUGAUGGGUGAGGGUUUGGUGCAUGUUUUAUUUUAAUCAUGACUAGAUCCACACUCAUCCAAAAAUUUGGUGUCCUCAUCUGGAAAAAUUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGACAAAGCGGUAGUUAUC---| G U A G UUUUA
CUAAA UUUU GAUGGGUG GGGUUUGGU CAUG U
GGUUU AAAA CUACUCAC CCUAGAUCA GUAC U
CAUUAAAAAGGUCUACUCCUGU^ A C A - UAAUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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Star sequence |
Tca-Mir-279-o22_5p* |
mirBase accession | MIMAT0019181 |
Sequence |
0- GAUGGGUGAGGGUUUGGUGCAUG -23
Get sequence
|
Mature sequence |
Tca-Mir-279-o22_3p |
mirBase accession | MIMAT0010201 |
Sequence |
37- UGACUAGAUCCACACUCAUCCAA -60
Get sequence
|