MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-276

Family name MIR-276 (all species)
Seed AGGAACU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-276
Paralogues Tca-Mir-276-as 
Orthologues Aae-Mir-276-P1  Aae-Mir-276-P2  Bge-Mir-276  Csc-Mir-276-P10  Csc-Mir-276-P11a  Csc-Mir-276-P11b  Dan-Mir-276-P1  Dan-Mir-276-P2  Dma-Mir-276  Dme-Mir-276-P1  Dme-Mir-276-P2  Dmo-Mir-276-P1  Dmo-Mir-276-P2  Dpu-Mir-276  Dsi-Mir-276-P1  Dsi-Mir-276-P2  Dya-Mir-276-P1  Dya-Mir-276-P2  Hme-Mir-276  Isc-Mir-276  Lpo-Mir-276-P3  Lpo-Mir-276-P4  Lpo-Mir-276-P5  Lpo-Mir-276-P6  Lpo-Mir-276-P7  Lpo-Mir-276-P8  Lpo-Mir-276-P9 
Node of Origin (locus) Arthropoda
Node of Origin (family) Arthropoda
Genome context
(Tcas5.2)
LG3: 12483938-12483995 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-276)
Mir-276 LG3: 12483938-12483995 [-] Ensembl
Mir-276-as LG3: 12483940-12483997 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGAACGGCGCUCUUUUUGGUAGACCACUAGCGAGGUAUAGAGUUCCUACGUGAUUUUUCGGCUGUAGGAACUUCAUACCGUGCUCUUGGAUUUACCGACCAUCAACGCACACACCA
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Structure
        10         20         30        40        50        
GCGGAACGGCGCUCUUU-        -|  CU    A     AG          UGAUU 
                  UUGGUAGA CCA  AGCG GGUAU  AGUUCCUACG     U
                  AGCCAUUU GGU  UCGU CCAUA  UCAAGGAUGU     U
ACCACACACGCAACUACC        A^  UC    G     CU          CGGCU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-276_5p*

mirBase accessionMIMAT0008380
Sequence
0- AGCGAGGUAUAGAGUUCCUACG -22
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Mature sequence

Tca-Mir-276_3p

mirBase accessionMIMAT0008381
Sequence
36- UAGGAACUUCAUACCGUGCUCU -58
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