| MirGeneDB ID | Sto-Novel-3 |
|---|
| Family name |
STO-NOVEL-3 (all species) |
|---|
| Seed |
CCAUAGA |
|---|
| Species |
Cloudy Catshark (Scyliorhinus torazame) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. torazame
|
|---|
| Node of Origin (family) |
S. torazame
|
|---|
Genome context
(GCA_003427355_STO_add) |
BFAA01002186.1: 18862-18933 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGUUAUUAUGGUCCAAAUGGCUGCCUUCUGUGCUGUAACCAUUUUAUGAUUCUGUGAUAUGUGUUUGUAGUUACAAUAGAACCAUAGAAACGUUACGGCACAGAAAGCGGACCAUUCAGCUCAUCGUAUCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGUUAUUAUGGUCCAAA- -| C CA A UGUGAUAUGUGU
UGG CUGC UUCUGUGCUGUAAC UUUUAUG UUC U
ACC GGCG AAGACACGGCAUUG AAGAUAC AAG U
GUCUAUGCUACUCGACUU A^ A CA C AUAACAUUGAUG
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Sto-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGCUGUAACCAUUUUAUGAUUC -22
Get sequence
|
|---|
| Mature sequence |
Sto-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
50- ACCAUAGAAACGUUACGGCACA -72
Get sequence
|
|---|
