MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-30-P1a  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Sto-Mir-30-P2b  Sto-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01001400.1: 433282-433340 [+]
Precursor
(pre-Mir +30nt flank)
CUUGACCGUGUGCAACUGAGCUCCAGGCACUGUAAACAUCCUACACUCAGCUGUAACAUAAAAGAGGCUGAGAGAAGGUUGUUUACUUUAACUGGCUUGGAACAGCAACUUUUUAAAAU
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Structure
        10        20        30             40        50         
CUUGACCGUGUGCAACUGAGC       ACU-----|      U   ACA       GUAACA 
                     UCCAGGC        GUAAACA CCU   CUCAGCU      \
                     AGGUUCG        CAUUUGU GGA   GAGUCGG      U
UAAAAUUUUUCAACGACA---       GUCAAUUU^      U   AGA       AGAAAA 
       110          100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Sto-Mir-30-P2a_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Sto-Mir-30-P2a_3p*

mirBase accessionNone
Sequence
37- CUGAGAGAAGGUUGUUUACUUU -59
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