MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-281

Family name MIR-281 (all species)
Seed GUCAUGG
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues
Orthologues Aae-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cbr-Mir-281-P3  Cbr-Mir-281-P4  Cel-Mir-281-P3  Cel-Mir-281-P4  Cgi-Mir-281  Cin-Mir-281  Cmi-Mir-281-v1  Cmi-Mir-281-v2  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2  Dan-Mir-281-P2-v1  Dan-Mir-281-P2-v2  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dme-Mir-281-P2-v1  Dme-Mir-281-P2-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P1-v2  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Ebu-Mir-281  Efe-Mir-281-P5  Efe-Mir-281-P6  Efe-Mir-281-P7  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Lan-Mir-281-P9  Lan-Mir-281-P10  Lgi-Mir-281-P8  Lgi-Mir-281-P9  Lpo-Mir-281-P13  Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P16  Lpo-Mir-281-P17  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Pma-Mir-281-P11  Pma-Mir-281-P12  Sko-Mir-281  Sme-Mir-281  Tca-Mir-281 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_003427355_STO_add)
BFAA01007574.1: 18599-18658 [-]
Precursor
(pre-Mir +30nt flank)
AAGGGUUCUCCUUUGAUGCUGAUGGUGCCCAGGGGAGCAGUACUUUUGACAAGACGUAUCUUUAAACUUGUCAUGGAGUUGCUCUCUUGAGUGUCAUCUAUUGCAGAUCUCUUUAUUCCU
Get precursor sequence
Structure
        10        20          30        40        50          
AAGGGUUCUCCUUUGAUGCU--|    UG C           UA  UU       ACGUAU 
                      GAUGG  C CAGGGGAGCAG  CU  UGACAAG      \
                      CUACU  G GUUCUCUCGUU  GG  ACUGUUC      C
UCCUUAUUUCUCUAGACGUUAU^    GU A           GA  U-       AAAUUU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Sto-Mir-281_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGGGAGCAGUACUUUUGACAAG -23
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Mature sequence

Sto-Mir-281_3p

mirBase accessionNone
Sequence
38- UGUCAUGGAGUUGCUCUCUUGA -60
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