MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-26-P1

Family name MIR-26 (all species)
Seed UCAAGUA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-26-P2  Sto-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Dre-Mir-26-P1b  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1a  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Lch-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1a  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Tni-Mir-26-P1b  Xla-Mir-26-P1c  Xla-Mir-26-P1d  Xtr-Mir-26-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01003659.1: 260921-260981 [+]
Precursor
(pre-Mir +30nt flank)
CGAAGGAUGUAUAAUCAGACUGGGACCUGGUUCAAGUAAUCCAGGAUAGGCUGUGUAGCUUCUGGUUGGCCUAUUCUUGAUUGCUUGCACUAGGGGGCAGUCACAGUACACAGAAUGCGCC
Get precursor sequence
Structure
        10          20        30        40        50          
CGAAGGAUGUAUAAUCA--|    GGA      U         C          GUGUAGC 
                   GACUG   CCUGGU CAAGUAAUC AGGAUAGGCU       \
                   CUGAC   GGAUCA GUUCGUUAG UCUUAUCCGG       U
CCGCGUAAGACACAUGACA^    GGG      C         U          UUGGUCU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Sto-Mir-26-P1_5p

mirBase accessionNone
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
Star sequence

Sto-Mir-26-P1_3p*

mirBase accessionNone
Sequence
39- CCUAUUCUUGAUUGCUUGCACU -61
Get sequence