Mir-190-P1

MirGeneDB ID

Sto-Mir-190-P1

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-190-P3

Orthologues

Aae-Mir-190 Aca-Mir-190-P1 Ami-Mir-190-P1 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P1 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P1 Cgi-Mir-190 Cli-Mir-190-P1 Cmi-Mir-190-P1 Cpi-Mir-190-P1 Cpo-Mir-190-P1 Cte-Mir-190 Dan-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P1 Dpu-Mir-190 Dre-Mir-190-P1b Dsi-Mir-190 Dya-Mir-190 Esc-Mir-190 Ete-Mir-190-P1 Gga-Mir-190-P1 Gja-Mir-190-P1 Gmo-Mir-190-P1a Gmo-Mir-190-P1b Hme-Mir-190 Hsa-Mir-190-P1 Isc-Mir-190 Lch-Mir-190-P1 Loc-Mir-190-P1 Mal-Mir-190-P1a Mal-Mir-190-P1b Mdo-Mir-190-P1 Mml-Mir-190-P1 Mmu-Mir-190-P1 Mun-Mir-190-P1 Npo-Mir-190 Oan-Mir-190-P1 Obi-Mir-190 Ocu-Mir-190-P1 Ovu-Mir-190 Pbv-Mir-190-P1 Pfl-Mir-190 Pma-Mir-190-o1 Pmi-Mir-190 Rno-Mir-190-P1c Rno-Mir-190-P1d Sha-Mir-190-P1 Sko-Mir-190 Spt-Mir-190-P1 Tca-Mir-190 Tgu-Mir-190-P1 Tni-Mir-190-P1a Tni-Mir-190-P1b Xbo-Mir-190

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01179247.1: 261-319 [+]

Precursor
(pre-Mir +30nt flank)

CCAGCUCGAUGUUUCCUGCAAGUCGCUGUGUGAUAUGUUUGAUAUAUUAGGUUGUUACUCAAGUCAACUAUAUAUCAAACAUAUUGCUAUAGUGUCCUGCCCUGUCUCCUGGGUACAAA

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Structure

        10          20         30        40        50         
CCAGCUCGAUGUUUCCU--   AGU      -|UG               UA     UUAC 
                   GCA   CGCUGU G  AUAUGUUUGAUAUAU  GGUUG    U
                   CGU   GUGAUA C  UAUACAAACUAUAUA  UCAAC    C
AAACAUGGGUCCUCUGUCC   CCU      U^GU               --     UGAA 
       110       100        90        80        70          60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Sto-Mir-190-P1_5p

mirBase accession

None

Sequence

0- UGAUAUGUUUGAUAUAUUAGGUUG -24

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Star sequence

Sto-Mir-190-P1_3p*

mirBase accession

None

Sequence

36- ACUAUAUAUCAAACAUAUUGCUA -59

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