MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01005977.1: 164715-164776 [+]
Precursor
(pre-Mir +30nt flank)
UACUUUUUUUCAGGCUUGCUGCUGACGGACGCUCUGACUUUAUUGCACUACUGUGUUUCACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAGGUAGUUCUGAUCACCCACAGGCAG
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Structure
        10          20        30           40        50         
UACUUUUUUUCAGGCUU--      GA    C   C    U---|         A  GUGUUU 
                   GCUGCU  CGGA GCU UGAC    UUAUUGCACU CU      \
                   UGAUGG  GUCU CGA ACUG    GAUAACGUGA GA      C
GACGGACACCCACUAGUCU      AA    A   A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Sto-Mir-130-P2b_5p*
mirBase accessionNone
Sequence 
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence

Sto-Mir-130-P2b_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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