MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01012481.1: 61702-61763 [+]
Precursor
(pre-Mir +30nt flank)
GCCCUGGGUCAGGGUUGACUGCUGUCGGAGGCUCUGACGAUAUUGCACUACUGUACUCACAGUUAAGCAGUGCAAUAGUAUUGUCAAAGCGUCAGGCACCAGAGAGCGAGCUCCCGUCGACA
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Structure
        10          20        30        40           50         
GCCCUGGGUCAGGGUUGA--   C    G  G   C         ---|     A  GUACUC 
                    CUG UGUC GA GCU UGACGAUAU   UGCACU CU      \
                    GAC ACGG CU CGA ACUGUUAUG   ACGUGA GA      A
ACAGCUGCCCUCGAGCGAGA   C    A  G   A         AUA^     C  AUUGAC 
120       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +2 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Sto-Mir-130-P2a_5p*

mirBase accessionNone
Sequence
0- GCUCUGACGAUAUUGCACUACU -22
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Mature sequence

Sto-Mir-130-P2a_3p

mirBase accessionNone
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCGU -62
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