Mir-103-P2

MirGeneDB ID

Sto-Mir-103-P2

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-103-P1 Sto-Mir-103-P4

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Dre-Mir-103-P2b Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hsa-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Tgu-Mir-103-P2 Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P2c Xla-Mir-103-P2d Xtr-Mir-103-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Deuterostomia

Genome context
(GCA_003427355_STO_add)

BFAA01003951.1: 146390-146449 [-]

Precursor
(pre-Mir +30nt flank)

ACAUGGGAGGAAAUGAUGCUUUGUGUUUUCAGCUUCUUUACAGUGCUGCCUUGUAGCAUCCAGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGCACAGAGACACAUACUGCAAGUGCAAA

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Structure

        10          20        30          40        50         
ACAUGGGAGGAAAUGAUG--            --|   U  U           C   UAGCA 
                    CUUUGUGUUUUC  AGCU CU UACAGUGCUGC UUG     U
                    GAGACACGAAAG  UCGG GA AUGUUACGACG AAC     C
AAACGUGAACGUCAUACACA            UA^   -  C           -   UAGAC 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Sto-Mir-103-P2_5p*

mirBase accession

None

Sequence

0- AGCUUCUUUACAGUGCUGCCUUG -23

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Mature sequence

Sto-Mir-103-P2_3p

mirBase accession

None

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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