MirGeneDB 2.1

MirGeneDB ID

Spu-Novel-3

Family name SPU-NOVEL-3 (all species)
Seed AUAUGAU
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. purpuratus
Node of Origin (family) S. purpuratus
Genome context
(Spur_5.0)
AAGJ06000004.1: 20050681-20050739 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUGACAUCAUCUAUGGGUUAAGUCCUUUUAUAUGAUCAAUGACAUAUGAGUAUAUUUACAUUCCCCAUGUGUAUUUGAUCAUAUCUAAGGCAAACCUUGUAUCAGCUCAGCAUCGAC
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Structure
        10            20        30        40        50         
CGAUGACAUCAUCUAUG----|   AA U    UU          UG       AGUAUAUU 
                     GGUU  G CCUU  AUAUGAUCAA  ACAUAUG        \
                     CCAA  C GGAA  UAUACUAGUU  UGUGUAC        U
CAGCUACGACUCGACUAUGUU^   A- -    UC          UA       CCCUUACA 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Novel-3_5p

mirBase accessionNone
Sequence
0- UAUAUGAUCAAUGACAUAUGAG -22
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Star sequence

Spu-Novel-3_3p*

mirBase accessionNone
Sequence
37- CAUGUGUAUUUGAUCAUAUCUA -59
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