MirGeneDB 2.1
MirGeneDB ID

Spu-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-242
Paralogues
Orthologues Bfl-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cgi-Mir-242  Cte-Mir-242  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Npo-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Sko-Mir-242 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Spur_5.0)		 AAGJ06000006.1: 24501599-24501659 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUGAAAGCUGUAACACCAUGUCGGGCAUUGCGUAGGCGUUGUGCACAGUGUUCUUUAAAUUACAAUUGUGCAUCUCAUCCACGUAAAUCACGGCACUGGUCACUAAUCAUCGCUGGAC
Get precursor sequence
Structure
        10         20         30        40         50          
CUGCUGAAAGCUGUAAC-    -|    GGCA      A  CGUU-         GUUCUUU 
                  ACCA UGUCG    UUGCGU GG     GUGCACAGU       \
                  UGGU ACGGC    AAUGCA CC     UACGUGUUA       A
CAGGUCGCUACUAAUCAC    C^    ACUA      -  UACUC         ACAUUAA 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-242_5p
mirBase accessionMIMAT0009647
Sequence 
0- UUGCGUAGGCGUUGUGCACAGU -22
Get sequence
Star sequence

Spu-Mir-242_3p*
mirBase accessionNone
Sequence 
39- UGUGCAUCUCAUCCACGUAAAU -61
Get sequence